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Bioc packages with 'hard' dependency on data packages
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| # Bioc packages with 'hard' dependency on data packages | |
| # Please consider making these a 'soft' dependency (aka Suggests) if data is only needed for examples/vignettes. | |
| software <- available.packages(repos = 'https://bioconductor.org/packages/devel/bioc/') | |
| annotation <- available.packages(repos = 'https://bioconductor.org/packages/release/data/annotation') | |
| experiment <- available.packages(repos = 'https://bioconductor.org/packages/release/data/experiment') | |
| datapkgs <- c(row.names(annotation), row.names(experiment)) | |
| deps <- tools::package_dependencies(db = software) | |
| datadeps <- sapply(deps, function(x){ | |
| intersect(x, datapkgs) | |
| }, simplify = FALSE) | |
| datadeps <- Filter(length, datadeps) | |
| print(datadeps) |
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