Created
March 23, 2019 08:00
-
-
Save jerowe/0ec7628e962838e9b4e6b98328322de9 to your computer and use it in GitHub Desktop.
CellProfiler v3.1.8 conda environment
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # run: conda env create -f environment.yml | |
| # run: conda env update -f environment.yml | |
| # run: conda env remove -n cellprofiler | |
| # This installs the v3.18 version of cellprofiler, which at the time of writing is the most recent stable release | |
| name: cellprofiler | |
| # in order of priority: highest (top) to lowest (bottom) | |
| channels: | |
| - anaconda | |
| - goodman # mysql-python for mac | |
| - bioconda | |
| - cyclus # java-jdk for windows | |
| - conda-forge # libxml2 for windows | |
| - BjornFJohansson # wxpython for linux | |
| dependencies: | |
| - python=2.7 | |
| - appdirs | |
| - boto3 | |
| - cython | |
| - h5py | |
| - ipywidgets | |
| - openjdk | |
| - joblib | |
| - jupyter | |
| - libtiff | |
| - libxml2 | |
| - libxslt | |
| - lxml | |
| - packaging | |
| - pillow | |
| - pip | |
| - pyzmq=15.3.0 | |
| - mahotas | |
| - matplotlib!=2.1.0,>2.0.0 | |
| - mysqlclient | |
| - numpy | |
| - raven | |
| - requests | |
| - scikit-image>=0.13 | |
| - scikit-learn | |
| - scipy | |
| - sphinx | |
| - tifffile | |
| - wxpython=3.0.2.0 | |
| - pip: | |
| - cellh5 | |
| - centrosome | |
| - inflect | |
| # - prokaryote==2.4.1 | |
| # - javabridge==1.0.18 | |
| # - python-bioformats==1.5.2 | |
| - git+https://github.com/CellProfiler/[email protected] |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment