Created
November 8, 2016 06:51
-
-
Save jerowe/a3fe532660fd0b38d236e88415d8f1fe to your computer and use it in GitHub Desktop.
Gencore Variant Detection 1.0 Conda Env Config File
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: gencore_variant_detection_1.0 | |
| channels: | |
| - bioconda | |
| - r | |
| - nyuad-cgsb | |
| dependencies: | |
| - perl-hpc-runner-slurm=2.58 | |
| - perl-biox-workflow=1.10 | |
| - perl-biox-workflow-plugin-fileexists=0.13 | |
| - perl-biox-workflow-plugin-filedetails=0.11 | |
| - discovar=52488 | |
| - discovardenovo=52488 | |
| - blast=2.2.31 | |
| - bwa=0.7.15 | |
| - samtools=1.3.1 | |
| - bcftools=1.3.1 | |
| - bedtools=2.25.0 | |
| - vcftools=0.1.14 | |
| - freebayes=1.0.2.29 | |
| - bamtools=2.4.0 | |
| - seqtk=1.2 | |
| - pear=0.9.6 | |
| - bowtie2=2.2.8 | |
| - tophat=2.1.0 | |
| - cufflinks=2.2.1 | |
| - circos=0.69.2 | |
| - star=2.5.2a | |
| - blat=35 | |
| - gatk=3.5 | |
| - picard=2.5.0 | |
| - prinseq=0.20.4 | |
| - snpeff=4.3 | |
| - vcflib=1.0.0_rc1 | |
| - r | |
| - r-base | |
| - r-essentials | |
| - bioconductor-biobase | |
| - gencore_variant_detection_docs=1.0 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment