Johannes Feist jfeist

The information for new people arriving at UAM has been moved to https://github.com/MMUSCLES/UAM-README/wiki

Jupyter Notebook extensions

Very useful collection of extensions for Jupyter Notebook (not JupyterLab though): https://github.com/ipython-contrib/jupyter_contrib_nbextensions - installed on soleus, all the extensions can be activated/configured through the "Nbextensions" tab in the notebook tree view (the "file explorer").

Matplotlib

style files

I have written two matplotlib style files, jf.mplstyle (default line colors based on seaborn with small modifications) and jf_cb.mplstyle (default line colors based on recommendations for viewers with colorblindness from Nature Methods 8, 441 (2011)). To use these, you can either (after having run import matplotlib.pyplot as plt or %pylab inline before)

call plt.style.use('https://johannesfeist.eu/misc/jf.mplstyle') in your python notebook to use the style file you want directly from my server.
or download the file and save it into into your local matplotlib style directo

	using Pkg
	Pkg.activate(".")

	using TensorCast
	using CuArrays

	using BenchmarkTools
	BenchmarkTools.DEFAULT_PARAMETERS.seconds = 0.5

	function test_cast(T)

	#!/bin/sh
	jq -r 'def banner: "\(.) " + (28-(.\|length))*"-";
	("Non-cell info" \| banner), del(.cells), "",
	(.cells[] \| ("\(.cell_type) cell" \| banner),
	"\(.source\|add)",
	if ($show_output == "1") then
	"",
	( select(.cell_type=="code" and (.outputs\|length)>0) \|
	("output" \| banner),
	(.outputs[] \|