Created
July 8, 2021 14:26
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Stack trace inputstream irods and vaadin
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| 2021-07-08 14:08:38.912 INFO 12812 --- [nio-8081-exec-9] n.m.views.authentication.LoginView : Successful login for koehorst | |
| ITEM PATH AFTER CLICK /unlock/home/koehorst/phyloseq/ALLCHECK_mAssayList__4.tsv | |
| 2021-07-08 14:08:51.932 ERROR 12812 --- [nio-8081-exec-9] c.p.i.SessionClosingIRODSFileInputStream : JargonException in read is converted to IOException for method contract | |
| org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000 | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.checkSpecificCodesAndThrowIfExceptionLocated(IRODSErrorScanner.java:276) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.inspectAndThrowIfNeeded(IRODSErrorScanner.java:115) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.processMessageInfoLessThanZero(IRODSMidLevelProtocol.java:1399) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:903) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:871) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:284) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:410) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:766) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.FileIOOperationsAOImpl.fileRead(FileIOOperationsAOImpl.java:140) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.read(IRODSFileInputStream.java:282) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.read(IRODSFileInputStream.java:339) ~[core-4.3.0.2.jar:na] | |
| at com.vaadin.flow.server.StreamResource$Pipe.read(StreamResource.java:104) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.StreamResource$Pipe.copy(StreamResource.java:94) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.StreamResource$Pipe.accept(StreamResource.java:77) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.communication.StreamResourceHandler.handleRequest(StreamResourceHandler.java:87) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.communication.StreamRequestHandler.handleRequest(StreamRequestHandler.java:104) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.VaadinService.handleRequest(VaadinService.java:1547) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.VaadinServlet.service(VaadinServlet.java:247) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.spring.SpringServlet.service(SpringServlet.java:111) ~[vaadin-spring-12.3.2.jar:na] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:741) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:712) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:459) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:352) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:312) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.servlet.mvc.ServletForwardingController.handleRequestInternal(ServletForwardingController.java:141) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:177) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:52) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1040) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:943) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1006) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:898) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:634) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:883) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:741) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53) ~[tomcat-embed-websocket-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:202) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:541) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:367) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:860) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1598) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na] | |
| at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na] | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at java.base/java.lang.Thread.run(Thread.java:834) ~[na:na] | |
| 2021-07-08 14:08:51.955 ERROR 12812 --- [nio-8081-exec-9] c.p.i.SessionClosingIRODSFileInputStream : JargonException in operation, rethrown as IOException for contract | |
| org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000 | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.checkSpecificCodesAndThrowIfExceptionLocated(IRODSErrorScanner.java:276) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.inspectAndThrowIfNeeded(IRODSErrorScanner.java:115) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.processMessageInfoLessThanZero(IRODSMidLevelProtocol.java:1399) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:903) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:871) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:284) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:410) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.IRODSFileSystemAOImpl.fileClose(IRODSFileSystemAOImpl.java:950) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.IRODSFileImpl.close(IRODSFileImpl.java:1322) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.close(IRODSFileInputStream.java:433) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.SessionClosingIRODSFileInputStream.close(SessionClosingIRODSFileInputStream.java:47) ~[core-4.3.0.2.jar:na] | |
| at com.vaadin.flow.server.StreamResource$Pipe.accept(StreamResource.java:78) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.communication.StreamResourceHandler.handleRequest(StreamResourceHandler.java:87) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.communication.StreamRequestHandler.handleRequest(StreamRequestHandler.java:104) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.VaadinService.handleRequest(VaadinService.java:1547) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.VaadinServlet.service(VaadinServlet.java:247) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.spring.SpringServlet.service(SpringServlet.java:111) ~[vaadin-spring-12.3.2.jar:na] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:741) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:712) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:459) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:352) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:312) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.servlet.mvc.ServletForwardingController.handleRequestInternal(ServletForwardingController.java:141) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:177) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:52) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1040) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:943) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1006) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:898) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:634) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:883) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:741) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53) ~[tomcat-embed-websocket-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:202) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:541) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:367) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:860) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1598) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na] | |
| at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na] | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at java.base/java.lang.Thread.run(Thread.java:834) ~[na:na] | |
| 2021-07-08 14:08:51.956 ERROR 12812 --- [nio-8081-exec-9] c.v.flow.server.DefaultErrorHandler : | |
| java.io.IOException: org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000 | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.read(IRODSFileInputStream.java:285) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.read(IRODSFileInputStream.java:339) ~[core-4.3.0.2.jar:na] | |
| at com.vaadin.flow.server.StreamResource$Pipe.read(StreamResource.java:104) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.StreamResource$Pipe.copy(StreamResource.java:94) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.StreamResource$Pipe.accept(StreamResource.java:77) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.communication.StreamResourceHandler.handleRequest(StreamResourceHandler.java:87) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.communication.StreamRequestHandler.handleRequest(StreamRequestHandler.java:104) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.VaadinService.handleRequest(VaadinService.java:1547) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.VaadinServlet.service(VaadinServlet.java:247) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.spring.SpringServlet.service(SpringServlet.java:111) ~[vaadin-spring-12.3.2.jar:na] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:741) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:712) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:459) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:352) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:312) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.servlet.mvc.ServletForwardingController.handleRequestInternal(ServletForwardingController.java:141) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:177) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:52) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1040) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:943) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1006) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:898) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:634) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:883) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:741) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53) ~[tomcat-embed-websocket-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:202) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:541) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:367) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:860) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1598) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na] | |
| at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na] | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at java.base/java.lang.Thread.run(Thread.java:834) ~[na:na] | |
| Suppressed: java.io.IOException: org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000 | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.close(IRODSFileInputStream.java:436) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.SessionClosingIRODSFileInputStream.close(SessionClosingIRODSFileInputStream.java:47) ~[core-4.3.0.2.jar:na] | |
| at com.vaadin.flow.server.StreamResource$Pipe.accept(StreamResource.java:78) ~[flow-server-2.4.6.jar:2.4.6] | |
| ... 55 common frames omitted | |
| Caused by: org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000 | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.checkSpecificCodesAndThrowIfExceptionLocated(IRODSErrorScanner.java:276) | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.inspectAndThrowIfNeeded(IRODSErrorScanner.java:115) | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.processMessageInfoLessThanZero(IRODSMidLevelProtocol.java:1399) | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:903) | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:871) | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:284) | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:410) | |
| at org.irods.jargon.core.pub.IRODSFileSystemAOImpl.fileClose(IRODSFileSystemAOImpl.java:950) | |
| at org.irods.jargon.core.pub.io.IRODSFileImpl.close(IRODSFileImpl.java:1322) | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.close(IRODSFileInputStream.java:433) | |
| ... 57 common frames omitted | |
| Caused by: org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000 | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.checkSpecificCodesAndThrowIfExceptionLocated(IRODSErrorScanner.java:276) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.inspectAndThrowIfNeeded(IRODSErrorScanner.java:115) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.processMessageInfoLessThanZero(IRODSMidLevelProtocol.java:1399) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:903) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:871) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:284) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:410) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:766) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.FileIOOperationsAOImpl.fileRead(FileIOOperationsAOImpl.java:140) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.read(IRODSFileInputStream.java:282) ~[core-4.3.0.2.jar:na] | |
| ... 59 common frames omitted | |
| 2021-07-08 14:08:51.958 ERROR 12812 --- [nio-8081-exec-9] o.a.c.c.C.[.[.[/].[springServlet] : Servlet.service() for servlet [springServlet] threw exception | |
| org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000 | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.checkSpecificCodesAndThrowIfExceptionLocated(IRODSErrorScanner.java:276) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.inspectAndThrowIfNeeded(IRODSErrorScanner.java:115) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.processMessageInfoLessThanZero(IRODSMidLevelProtocol.java:1399) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:903) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:871) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:284) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:410) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:766) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.FileIOOperationsAOImpl.fileRead(FileIOOperationsAOImpl.java:140) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.read(IRODSFileInputStream.java:282) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.read(IRODSFileInputStream.java:339) ~[core-4.3.0.2.jar:na] | |
| at com.vaadin.flow.server.StreamResource$Pipe.read(StreamResource.java:104) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.StreamResource$Pipe.copy(StreamResource.java:94) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.StreamResource$Pipe.accept(StreamResource.java:77) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.communication.StreamResourceHandler.handleRequest(StreamResourceHandler.java:87) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.communication.StreamRequestHandler.handleRequest(StreamRequestHandler.java:104) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.VaadinService.handleRequest(VaadinService.java:1547) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.VaadinServlet.service(VaadinServlet.java:247) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.spring.SpringServlet.service(SpringServlet.java:111) ~[vaadin-spring-12.3.2.jar:na] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:741) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:712) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:459) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:352) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:312) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.servlet.mvc.ServletForwardingController.handleRequestInternal(ServletForwardingController.java:141) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:177) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:52) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1040) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:943) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1006) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:898) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:634) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:883) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:741) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| Caused by: org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000 | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53) ~[tomcat-embed-websocket-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| Caused by: org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000 | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:202) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:541) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:367) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:860) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1598) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na] | |
| at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na] | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at java.base/java.lang.Thread.run(Thread.java:834) ~[na:na] | |
| 2021-07-08 14:08:51.964 ERROR 12812 --- [nio-8081-exec-9] o.a.c.c.C.[.[.[/].[dispatcherServlet] : Servlet.service() for servlet [dispatcherServlet] in context with path [] threw exception [com.vaadin.flow.server.ServiceException: java.io.IOException: org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000] with root cause | |
| org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000 | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.checkSpecificCodesAndThrowIfExceptionLocated(IRODSErrorScanner.java:276) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSErrorScanner.inspectAndThrowIfNeeded(IRODSErrorScanner.java:115) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.processMessageInfoLessThanZero(IRODSMidLevelProtocol.java:1399) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:903) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.readMessage(IRODSMidLevelProtocol.java:871) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:284) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:410) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.connection.IRODSMidLevelProtocol.irodsFunction(IRODSMidLevelProtocol.java:766) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.FileIOOperationsAOImpl.fileRead(FileIOOperationsAOImpl.java:140) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.read(IRODSFileInputStream.java:282) ~[core-4.3.0.2.jar:na] | |
| at org.irods.jargon.core.pub.io.IRODSFileInputStream.read(IRODSFileInputStream.java:339) ~[core-4.3.0.2.jar:na] | |
| at com.vaadin.flow.server.StreamResource$Pipe.read(StreamResource.java:104) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.StreamResource$Pipe.copy(StreamResource.java:94) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.StreamResource$Pipe.accept(StreamResource.java:77) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.communication.StreamResourceHandler.handleRequest(StreamResourceHandler.java:87) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.communication.StreamRequestHandler.handleRequest(StreamRequestHandler.java:104) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.VaadinService.handleRequest(VaadinService.java:1547) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.server.VaadinServlet.service(VaadinServlet.java:247) ~[flow-server-2.4.6.jar:2.4.6] | |
| at com.vaadin.flow.spring.SpringServlet.service(SpringServlet.java:111) ~[vaadin-spring-12.3.2.jar:na] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:741) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:712) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:459) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:352) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:312) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.servlet.mvc.ServletForwardingController.handleRequestInternal(ServletForwardingController.java:141) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:177) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:52) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1040) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:943) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1006) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:898) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:634) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:883) ~[spring-webmvc-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:741) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53) ~[tomcat-embed-websocket-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) ~[spring-web-5.2.3.RELEASE.jar:5.2.3.RELEASE] | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:202) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:541) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:367) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:860) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1598) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na] | |
| at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na] | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) ~[tomcat-embed-core-9.0.30.jar:9.0.30] | |
| at java.base/java.lang.Thread.run(Thread.java:834) ~[na:na] | |
| 2021-07-08 14:08:51.990 ERROR 12812 --- [nio-8081-exec-9] s.e.ErrorMvcAutoConfiguration$StaticView : Cannot render error page for request [/VAADIN/dynamic/resource/0/41046bba-ff5e-4c33-84ac-c00a12d33e0b/ALLCHECK_mAssayList__4.tsv] and exception [java.io.IOException: org.irods.jargon.core.exception.JargonException: error code received from iRODS:-345000] as the response has already been committed. As a result, the response may have the wrong status code. |
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