jkbonfield

#!/usr/bin/perl -w

# Uses figures from https://www.biorxiv.org/content/early/2016/03/15/043794
# to add random C methylation to a SAM file, storing in a variety of ways.

use strict;

srand(0);

my $method = shift(@ARGV);

jkbonfield

#include <stdio.h>
#include <string.h>
#include <stdlib.h>
#include <unistd.h>
#include <inttypes.h>

#ifndef MAXD
#define MAXD 15
#endif

jkbonfield

jkbonfield

#include <stdio.h>
#include <stdlib.h>
#include <stdint.h>
#include <string.h>
#include <math.h>

typedef struct __kstring_t {
	size_t l, m;
	char *s;
} kstring_t;

jkbonfield