Created
September 17, 2020 11:11
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Codespell wrapper script and filters for HTSlib et al
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| #!/bin/sh | |
| skip=`(cat /dev/null $(find . -name 'wt-*' -prune -o -name .gitignore -print) | sed '/^$/d;s&^.*/&&'; printf '.DS_Store,*.dSYM | |
| *.sam,*.bam,*.cram | |
| *.fq,*.vcf | |
| *.bed,*.bai,*.csi,*.crai,*.gz,*.gz.* | |
| *.out,*.expected | |
| aclocal.m4 | |
| .git,interesting,wt-*')|tr '\n' ,` | |
| datadir=$HOME/htslib/interesting | |
| exec codespell --ignore-words $datadir/codespell.ignore --exclude-file=$datadir/codespell.exclude --skip "$skip" "$@" |
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| .TE |
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| alloced | |
| als | |
| fpr | |
| hist | |
| iff | |
| seeked | |
| som | |
| strat |
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wt-*is my local convention for additional Git working trees. I create extra ephemeral working trees within my main checked out repository directory for a project and have/wt-*in a global excludesfile.git worktreeis fantastic.(And
interestingis for notes, data files, etc.)