Created
January 10, 2015 01:28
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sudo py.test fails on Travis
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| travis@debug-hs-11922-jni-python-1420819368:~/jni/cellom2tif$ py.test | |
| ============================= test session starts ============================== | |
| platform linux2 -- Python 2.7.3 -- py-1.4.26 -- pytest-2.6.4 | |
| plugins: cov | |
| collected 10 items | |
| verify.py . | |
| cellom2tif/cellom2tif.py .. | |
| tests/test_cellom2tif.py . | |
| tests/test_package.py .. | |
| tests/test_zz_jvm_kill.py .... | |
| --------------- coverage: platform linux2, python 2.7.3-final-0 ---------------- | |
| Name Stmts Miss Cover Missing | |
| ------------------------------------------------------ | |
| cellom2tif/__init__ 3 0 100% | |
| cellom2tif/cellom2tif 77 14 82% 170, 186-205, 209 | |
| cellom2tif/filetypes 6 2 67% 31-32 | |
| setup 15 1 93% 25 | |
| tests/test_cellom2tif 4 0 100% | |
| tests/test_package 77 21 73% 72-85, 87, 92-98 | |
| tests/test_zz_jvm_kill 19 0 100% | |
| verify 42 21 50% 10-19, 64, 75-93 | |
| ------------------------------------------------------ | |
| TOTAL 243 59 76% | |
| ========================== 10 passed in 5.06 seconds =========================== | |
| travis@debug-hs-11922-jni-python-1420819368:~/jni/cellom2tif$ sudo py.test | |
| ============================= test session starts ============================== | |
| platform linux2 -- Python 2.7.3 -- py-1.4.26 -- pytest-2.6.4 | |
| plugins: cov | |
| collected 10 items | |
| verify.py . | |
| cellom2tif/cellom2tif.py .. | |
| tests/test_cellom2tif.py . | |
| tests/test_package.py FF | |
| tests/test_zz_jvm_kill.py .... | |
| =================================== FAILURES =================================== | |
| __________________________ test_runtime_ignore_masks ___________________________ | |
| outdir = <open file 'test-output-2015-01-10-01-25-53.txt', mode 'w' at 0x33b3a50> | |
| def test_runtime_ignore_masks(outdir): | |
| call = ['python', 'bin/cellom2tif'] | |
| flags = ['-m'] | |
| indirs = [test_data_dir, test_output_mask_dir] | |
| resdir = test_results_mask_dir | |
| cmd_line = call + flags + indirs | |
| sp.call(cmd_line, shell=False) | |
| missing, not_equal = find_errors(indirs[1], resdir, ignore_masks=True) | |
| > assert len(missing) == 0 | |
| E assert 18 == 0 | |
| E + where 18 = len(['test-data-results-m/d2/MFGTMP_120628160001_C18f03d0.tif', 'test-data-results-m/d2/MFGTMP_120628160001_C18f03d1.tif',...st-data-results-m/d2/MFGTMP_120628160001_C18f04d1.tif', 'test-data-results-m/d2/MFGTMP_120628160001_C18f04d2.tif', ...]) | |
| tests/test_package.py:109: AssertionError | |
| ----------------------------- Captured stderr call ----------------------------- | |
| log4j:WARN No appenders could be found for logger (loci.common.NIOByteBufferProvider). | |
| log4j:WARN Please initialize the log4j system properly. | |
| set(['MFGTMP_120628160001_C18f03d0.tif', 'MFGTMP_120628160001_C18f05d0.tif', 'MFGTMP_120628160001_C18f04d0.tif', 'MFGTMP_120628160001_C18f05d2.tif', 'MFGTMP_120628160001_C18f04d2.tif', 'MFGTMP_120628160001_C18f03d1.tif', 'MFGTMP_120628160001_C18f05d1.tif', 'MFGTMP_120628160001_C18f03d2.tif', 'MFGTMP_120628160001_C18f04d1.tif']) | |
| _________________________________ test_runtime _________________________________ | |
| outdir = <open file 'test-output-2015-01-10-01-25-59.txt', mode 'w' at 0x3485270> | |
| def test_runtime(outdir): | |
| call = ['python', 'bin/cellom2tif'] | |
| indirs = [test_data_dir, test_output_dir] | |
| resdir = test_results_dir | |
| cmd_line = call + indirs | |
| sp.call(cmd_line, shell=False) | |
| missing, not_equal = find_errors(indirs[1], resdir, ignore_masks=True) | |
| > assert len(missing) == 0 | |
| E assert 24 == 0 | |
| E + where 24 = len(['test-data-results/d2/MFGTMP_120628160001_C18f03d0.tif', 'test-data-results/d2/MFGTMP_120628160001_C18f03d1.tif', 'te... 'test-data-results/d2/MFGTMP_120628160001_C18f04d0.tif', 'test-data-results/d2/MFGTMP_120628160001_C18f04d1.tif', ...]) | |
| tests/test_package.py:120: AssertionError | |
| ----------------------------- Captured stderr call ----------------------------- | |
| log4j:WARN No appenders could be found for logger (loci.common.NIOByteBufferProvider). | |
| log4j:WARN Please initialize the log4j system properly. | |
| set(['MFGTMP_120628160001_C18f03d0.tif', 'MFGTMP_120628160001_C18f05o1.tif', 'MFGTMP_120628160001_C18f05d0.tif', 'MFGTMP_120628160001_C18f04d0.tif', 'MFGTMP_120628160001_C18f05d2.tif', 'MFGTMP_120628160001_C18f04d2.tif', 'MFGTMP_120628160001_C18f03d1.tif', 'MFGTMP_120628160001_C18f05d1.tif', 'MFGTMP_120628160001_C18f03d2.tif', 'MFGTMP_120628160001_C18f04o1.tif', 'MFGTMP_120628160001_C18f03o1.tif', 'MFGTMP_120628160001_C18f04d1.tif']) | |
| --------------- coverage: platform linux2, python 2.7.3-final-0 ---------------- | |
| Name Stmts Miss Cover Missing | |
| ------------------------------------------------------ | |
| bin/cellom2tif 6 0 100% | |
| cellom2tif/__init__ 3 0 100% | |
| cellom2tif/cellom2tif 77 14 82% 170, 186-205, 209 | |
| cellom2tif/filetypes 6 2 67% 31-32 | |
| setup 15 1 93% 25 | |
| tests/test_cellom2tif 4 0 100% | |
| tests/test_package 77 14 82% 81-85, 92-98, 110, 121 | |
| tests/test_zz_jvm_kill 19 0 100% | |
| verify 42 21 50% 10-19, 64, 75-93 | |
| ------------------------------------------------------ | |
| TOTAL 249 52 79% | |
| ===================== 2 failed, 8 passed in 18.65 seconds ====================== |
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