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| wget https://raw.githubusercontent.com/jodyphelan/TBProfiler/dev/conda/linux-latest.txt | |
| conda create --name tb-profiler-dev --file linux-latest.txt | |
| conda activate tb-profiler-dev | |
| pip install --force-reinstall git+https://github.com/jodyphelan/pathogen-profiler.git@dev | |
| pip install --force-reinstall git+https://github.com/jodyphelan/TBProfiler.git@dev | |
| # If you want to use a custom refrence | |
| tb-profiler update_tbdb --match_ref ~/refgenome/NC000962.3.fa --branch test | |
| # If you want to install ntm-profiler | |
| pip install --force-reinstall git+https://github.com/jodyphelan/ntm-profiler.git@dev | |
| ntm-profiler update_db | |
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