hhblits stderr

stderr.txt

I0719 14:43:06.996543 139929070653184 run_docker.py:180] E0719 13:43:06.994233 139663816972096 hhblits.py:141] - 11:45:50.511 INFO: Searching 65983866 column state sequences.
I0719 14:43:06.996851 139929070653184 run_docker.py:180] E0719 13:43:06.994395 139663816972096 hhblits.py:141] - 11:45:51.265 INFO: Searching 15161831 column state sequences.
I0719 14:43:06.997076 139929070653184 run_docker.py:180] E0719 13:43:06.994539 139663816972096 hhblits.py:141] - 11:45:51.326 INFO: /mnt/fasta_path_0/dltA.fa is in A2M, A3M or FASTA format
I0719 14:43:06.997292 139929070653184 run_docker.py:180] E0719 13:43:06.994683 139663816972096 hhblits.py:141] - 11:45:51.327 INFO: Iteration 1
I0719 14:43:06.997498 139929070653184 run_docker.py:180] E0719 13:43:06.994824 139663816972096 hhblits.py:141] - 11:45:51.559 INFO: Prefiltering database
I0719 14:43:06.997703 139929070653184 run_docker.py:180] E0719 13:43:06.994960 139663816972096 hhblits.py:141] - 11:55:13.366 INFO: HMMs passed 1st prefilter (gapless profile-profile alignment)  : 1397832
I0719 14:43:06.997908 139929070653184 run_docker.py:180] E0719 13:43:06.995095 139663816972096 hhblits.py:141] - 11:57:16.552 INFO: HMMs passed 1st prefilter (gapless profile-profile alignment)  : 360697
I0719 14:43:06.998111 139929070653184 run_docker.py:180] E0719 13:43:06.995229 139663816972096 hhblits.py:141] - 11:57:19.090 WARNING: database contains sequences that exceed maximum allowed size (maxres = 20001). Max sequence length can be increased with parameter -maxres.
I0719 14:43:06.998322 139929070653184 run_docker.py:180] E0719 13:43:06.995374 139663816972096 hhblits.py:141] - 11:57:19.229 INFO: HMMs passed 2nd prefilter (gapped profile-profile alignment)   : 105206
I0719 14:43:06.998522 139929070653184 run_docker.py:180] E0719 13:43:06.995508 139663816972096 hhblits.py:141] - 11:57:19.229 INFO: HMMs passed 2nd prefilter and not found in previous iterations : 105206
I0719 14:43:06.998721 139929070653184 run_docker.py:180] E0719 13:43:06.995641 139663816972096 hhblits.py:141] - 11:57:19.229 INFO: Scoring 105206 HMMs using HMM-HMM Viterbi alignment
I0719 14:43:06.998921 139929070653184 run_docker.py:180] E0719 13:43:06.995775 139663816972096 hhblits.py:141] - 11:57:19.466 INFO: Alternative alignment: 0
I0719 14:43:06.999120 139929070653184 run_docker.py:180] E0719 13:43:06.995969 139663816972096 hhblits.py:141] - 11:57:37.573 INFO: 2000 alignments done
I0719 14:43:06.999320 139929070653184 run_docker.py:180] E0719 13:43:06.996104 139663816972096 hhblits.py:141] - 11:57:52.677 INFO: 4000 alignments done
I0719 14:43:06.999521 139929070653184 run_docker.py:180] E0719 13:43:06.996238 139663816972096 hhblits.py:141] - 11:58:06.869 INFO: 6000 alignments done
I0719 14:43:06.999722 139929070653184 run_docker.py:180] E0719 13:43:06.996330 139663816972096 hhblits.py:141] - 11:58:20.694 INFO: 8000 alignments done
I0719 14:43:07.000056 139929070653184 run_docker.py:180] E0719 13:43:06.996407 139663816972096 hhblits.py:141] - 11:58:33.782 INFO: 10000 alignments done
I0719 14:43:07.000257 139929070653184 run_docker.py:180] E0719 13:43:06.996485 139663816972096 hhblits.py:141] - 11:58:46.520 INFO: 12000 alignments done
I0719 14:43:07.000457 139929070653184 run_docker.py:180] E0719 13:43:06.996562 139663816972096 hhblits.py:141] - 11:58:59.094 INFO: 14000 alignments done
I0719 14:43:07.000655 139929070653184 run_docker.py:180] E0719 13:43:06.996639 139663816972096 hhblits.py:141] - 11:59:11.776 INFO: 16000 alignments done
I0719 14:43:07.000851 139929070653184 run_docker.py:180] E0719 13:43:06.996716 139663816972096 hhblits.py:141] - 11:59:24.566 INFO: 18000 alignments done
I0719 14:43:07.001049 139929070653184 run_docker.py:180] E0719 13:43:06.996792 139663816972096 hhblits.py:141] - 11:59:36.422 INFO: 20000 alignments done
I0719 14:43:07.001247 139929070653184 run_docker.py:180] E0719 13:43:06.996869 139663816972096 hhblits.py:141] - 11:59:48.741 INFO: 22000 alignments done
I0719 14:43:07.001446 139929070653184 run_docker.py:180] E0719 13:43:06.996946 139663816972096 hhblits.py:141] - 12:00:01.036 INFO: 24000 alignments done
I0719 14:43:07.001645 139929070653184 run_docker.py:180] E0719 13:43:06.997023 139663816972096 hhblits.py:141] - 12:00:13.016 INFO: 26000 alignments done
I0719 14:43:07.001846 139929070653184 run_docker.py:180] E0719 13:43:06.997100 139663816972096 hhblits.py:141] - 12:00:24.945 INFO: 28000 alignments done
I0719 14:43:07.002044 139929070653184 run_docker.py:180] E0719 13:43:06.997177 139663816972096 hhblits.py:141] - 12:00:36.813 INFO: 30000 alignments done
I0719 14:43:07.002243 139929070653184 run_docker.py:180] E0719 13:43:06.997254 139663816972096 hhblits.py:141] - 12:00:48.921 INFO: 32000 alignments done
I0719 14:43:07.002439 139929070653184 run_docker.py:180] E0719 13:43:06.997330 139663816972096 hhblits.py:141] - 12:01:01.142 INFO: 34000 alignments done
I0719 14:43:07.002635 139929070653184 run_docker.py:180] E0719 13:43:06.997407 139663816972096 hhblits.py:141] - 12:01:13.253 INFO: 36000 alignments done
I0719 14:43:07.002831 139929070653184 run_docker.py:180] E0719 13:43:06.997484 139663816972096 hhblits.py:141] - 12:01:25.255 INFO: 38000 alignments done
I0719 14:43:07.003028 139929070653184 run_docker.py:180] E0719 13:43:06.997560 139663816972096 hhblits.py:141] - 12:01:36.760 INFO: 40000 alignments done
I0719 14:43:07.003225 139929070653184 run_docker.py:180] E0719 13:43:06.997637 139663816972096 hhblits.py:141] - 12:01:47.339 INFO: 42000 alignments done
I0719 14:43:07.003425 139929070653184 run_docker.py:180] E0719 13:43:06.997712 139663816972096 hhblits.py:141] - 12:02:02.056 INFO: 44000 alignments done
I0719 14:43:07.003624 139929070653184 run_docker.py:180] E0719 13:43:06.997788 139663816972096 hhblits.py:141] - 12:02:15.829 INFO: 46000 alignments done
I0719 14:43:07.003835 139929070653184 run_docker.py:180] E0719 13:43:06.997865 139663816972096 hhblits.py:141] - 12:02:28.887 INFO: 48000 alignments done
I0719 14:43:07.004036 139929070653184 run_docker.py:180] E0719 13:43:06.997941 139663816972096 hhblits.py:141] - 12:02:42.015 INFO: 50000 alignments done
I0719 14:43:07.004231 139929070653184 run_docker.py:180] E0719 13:43:06.998017 139663816972096 hhblits.py:141] - 12:02:55.989 INFO: 52000 alignments done
I0719 14:43:07.004428 139929070653184 run_docker.py:180] E0719 13:43:06.998094 139663816972096 hhblits.py:141] - 12:03:10.126 INFO: 54000 alignments done
I0719 14:43:07.004634 139929070653184 run_docker.py:180] E0719 13:43:06.998170 139663816972096 hhblits.py:141] - 12:03:23.385 INFO: 56000 alignments done
I0719 14:43:07.004828 139929070653184 run_docker.py:180] E0719 13:43:06.998247 139663816972096 hhblits.py:141] - 12:03:37.210 INFO: 58000 alignments done
I0719 14:43:07.005024 139929070653184 run_docker.py:180] E0719 13:43:06.998322 139663816972096 hhblits.py:141] - 12:03:50.674 INFO: 60000 alignments done
I0719 14:43:07.005222 139929070653184 run_docker.py:180] E0719 13:43:06.998398 139663816972096 hhblits.py:141] - 12:04:03.754 INFO: 62000 alignments done
I0719 14:43:07.005420 139929070653184 run_docker.py:180] E0719 13:43:06.998474 139663816972096 hhblits.py:141] - 12:04:16.449 INFO: 64000 alignments done
I0719 14:43:07.005618 139929070653184 run_docker.py:180] E0719 13:43:06.998563 139663816972096 hhblits.py:141] - 12:04:28.389 INFO: 66000 alignments done
I0719 14:43:07.005811 139929070653184 run_docker.py:180] E0719 13:43:06.998674 139663816972096 hhblits.py:141] - 12:04:38.298 INFO: 68000 alignments done
I0719 14:43:07.006007 139929070653184 run_docker.py:180] E0719 13:43:06.998769 139663816972096 hhblits.py:141] - 12:04:46.106 INFO: 70000 alignments done
I0719 14:43:07.006204 139929070653184 run_docker.py:180] E0719 13:43:06.998869 139663816972096 hhblits.py:141] - 12:04:53.843 INFO: 72000 alignments done
I0719 14:43:07.006401 139929070653184 run_docker.py:180] E0719 13:43:06.998958 139663816972096 hhblits.py:141] - 12:05:01.447 INFO: 74000 alignments done
I0719 14:43:07.006598 139929070653184 run_docker.py:180] E0719 13:43:06.999048 139663816972096 hhblits.py:141] - 12:05:09.358 INFO: 76000 alignments done
I0719 14:43:07.006794 139929070653184 run_docker.py:180] E0719 13:43:06.999137 139663816972096 hhblits.py:141] - 12:05:16.983 INFO: 78000 alignments done
I0719 14:43:07.006993 139929070653184 run_docker.py:180] E0719 13:43:06.999244 139663816972096 hhblits.py:141] - 12:05:24.890 INFO: 80000 alignments done
I0719 14:43:07.007192 139929070653184 run_docker.py:180] E0719 13:43:06.999336 139663816972096 hhblits.py:141] - 12:05:33.584 INFO: 82000 alignments done
I0719 14:43:07.007390 139929070653184 run_docker.py:180] E0719 13:43:06.999445 139663816972096 hhblits.py:141] - 12:05:43.710 INFO: 84000 alignments done
I0719 14:43:07.007586 139929070653184 run_docker.py:180] E0719 13:43:06.999551 139663816972096 hhblits.py:141] - 12:05:52.289 INFO: 86000 alignments done
I0719 14:43:07.007783 139929070653184 run_docker.py:180] E0719 13:43:06.999640 139663816972096 hhblits.py:141] - 12:06:00.764 INFO: 88000 alignments done
I0719 14:43:07.008087 139929070653184 run_docker.py:180] E0719 13:43:06.999749 139663816972096 hhblits.py:141] - 12:06:09.145 INFO: 90000 alignments done
I0719 14:43:07.008164 139929070653184 run_docker.py:180] E0719 13:43:06.999864 139663816972096 hhblits.py:141] - 12:06:17.552 INFO: 92000 alignments done
I0719 14:43:07.008240 139929070653184 run_docker.py:180] E0719 13:43:06.999973 139663816972096 hhblits.py:141] - 12:06:25.893 INFO: 94000 alignments done
I0719 14:43:07.008316 139929070653184 run_docker.py:180] E0719 13:43:07.000079 139663816972096 hhblits.py:141] - 12:06:33.714 INFO: 96000 alignments done
I0719 14:43:07.008393 139929070653184 run_docker.py:180] E0719 13:43:07.000167 139663816972096 hhblits.py:141] - 12:06:41.699 INFO: 98000 alignments done
I0719 14:43:07.008469 139929070653184 run_docker.py:180] E0719 13:43:07.000265 139663816972096 hhblits.py:141] - 12:06:49.851 INFO: 100000 alignments done
I0719 14:43:07.008546 139929070653184 run_docker.py:180] E0719 13:43:07.000374 139663816972096 hhblits.py:141] - 12:06:57.886 INFO: 102000 alignments done
I0719 14:43:07.008623 139929070653184 run_docker.py:180] E0719 13:43:07.000485 139663816972096 hhblits.py:141] - 12:07:04.843 INFO: 104000 alignments done
I0719 14:43:07.008698 139929070653184 run_docker.py:180] E0719 13:43:07.000589 139663816972096 hhblits.py:141] - 12:07:08.775 INFO: 105206 alignments done
I0719 14:43:07.008774 139929070653184 run_docker.py:180] E0719 13:43:07.000679 139663816972096 hhblits.py:141] - 12:07:08.783 INFO: Alternative alignment: 1
I0719 14:43:07.008850 139929070653184 run_docker.py:180] E0719 13:43:07.000777 139663816972096 hhblits.py:141] - 12:08:26.077 INFO: 105154 alignments done
I0719 14:43:07.008926 139929070653184 run_docker.py:180] E0719 13:43:07.000868 139663816972096 hhblits.py:141] - 12:08:26.344 INFO: Alternative alignment: 2
I0719 14:43:07.009001 139929070653184 run_docker.py:180] E0719 13:43:07.000965 139663816972096 hhblits.py:141] - 12:09:03.586 INFO: 22607 alignments done
I0719 14:43:07.009077 139929070653184 run_docker.py:180] E0719 13:43:07.001074 139663816972096 hhblits.py:141] - 12:09:03.625 INFO: Alternative alignment: 3
I0719 14:43:07.009154 139929070653184 run_docker.py:180] E0719 13:43:07.001184 139663816972096 hhblits.py:141] - 12:09:23.590 INFO: 6669 alignments done
I0719 14:43:07.009230 139929070653184 run_docker.py:180] E0719 13:43:07.001277 139663816972096 hhblits.py:141] - 12:09:27.019 INFO: Premerge done
I0719 14:43:07.009307 139929070653184 run_docker.py:180] E0719 13:43:07.001373 139663816972096 hhblits.py:141] - 12:09:27.048 INFO: Realigning 78947 HMM-HMM alignments using Maximum Accuracy algorithm
I0719 14:43:07.009385 139929070653184 run_docker.py:180] E0719 13:43:07.001473 139663816972096 hhblits.py:141] - 12:28:55.287 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.009461 139929070653184 run_docker.py:180] E0719 13:43:07.001562 139663816972096 hhblits.py:141] - 12:40:49.573 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.009537 139929070653184 run_docker.py:180] E0719 13:43:07.001671 139663816972096 hhblits.py:141] - 12:41:53.100 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.009615 139929070653184 run_docker.py:180] E0719 13:43:07.001783 139663816972096 hhblits.py:141] - 12:41:59.411 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.009692 139929070653184 run_docker.py:180] E0719 13:43:07.001887 139663816972096 hhblits.py:141] - 12:42:14.745 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.009768 139929070653184 run_docker.py:180] E0719 13:43:07.001978 139663816972096 hhblits.py:141] - 12:42:37.516 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.009845 139929070653184 run_docker.py:180] E0719 13:43:07.002082 139663816972096 hhblits.py:141] - 12:42:38.550 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.009922 139929070653184 run_docker.py:180] E0719 13:43:07.002171 139663816972096 hhblits.py:141] - 12:42:41.991 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.009999 139929070653184 run_docker.py:180] E0719 13:43:07.002256 139663816972096 hhblits.py:141] - 12:43:13.319 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010075 139929070653184 run_docker.py:180] E0719 13:43:07.002342 139663816972096 hhblits.py:141] - 12:43:13.782 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010152 139929070653184 run_docker.py:180] E0719 13:43:07.002429 139663816972096 hhblits.py:141] - 12:43:17.085 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010228 139929070653184 run_docker.py:180] E0719 13:43:07.002516 139663816972096 hhblits.py:141] - 12:43:18.833 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010304 139929070653184 run_docker.py:180] E0719 13:43:07.002601 139663816972096 hhblits.py:141] - 12:43:44.682 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010380 139929070653184 run_docker.py:180] E0719 13:43:07.002686 139663816972096 hhblits.py:141] - 12:44:00.880 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010456 139929070653184 run_docker.py:180] E0719 13:43:07.002779 139663816972096 hhblits.py:141] - 12:44:36.292 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010531 139929070653184 run_docker.py:180] E0719 13:43:07.002860 139663816972096 hhblits.py:141] - 12:44:58.088 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010608 139929070653184 run_docker.py:180] E0719 13:43:07.002947 139663816972096 hhblits.py:141] - 12:45:11.967 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010685 139929070653184 run_docker.py:180] E0719 13:43:07.003034 139663816972096 hhblits.py:141] - 12:45:33.210 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010762 139929070653184 run_docker.py:180] E0719 13:43:07.003119 139663816972096 hhblits.py:141] - 12:45:44.793 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010838 139929070653184 run_docker.py:180] E0719 13:43:07.003207 139663816972096 hhblits.py:141] - 12:45:50.483 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010915 139929070653184 run_docker.py:180] E0719 13:43:07.003293 139663816972096 hhblits.py:141] - 12:45:51.002 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.010992 139929070653184 run_docker.py:180] E0719 13:43:07.003389 139663816972096 hhblits.py:141] - 12:45:52.716 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011070 139929070653184 run_docker.py:180] E0719 13:43:07.003484 139663816972096 hhblits.py:141] - 12:46:02.776 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011145 139929070653184 run_docker.py:180] E0719 13:43:07.003576 139663816972096 hhblits.py:141] - 12:46:05.550 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011221 139929070653184 run_docker.py:180] E0719 13:43:07.003673 139663816972096 hhblits.py:141] - 12:46:05.601 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011296 139929070653184 run_docker.py:180] E0719 13:43:07.003780 139663816972096 hhblits.py:141] - 12:46:12.468 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011373 139929070653184 run_docker.py:180] E0719 13:43:07.003886 139663816972096 hhblits.py:141] - 12:46:14.175 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011450 139929070653184 run_docker.py:180] E0719 13:43:07.003994 139663816972096 hhblits.py:141] - 12:46:25.178 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011526 139929070653184 run_docker.py:180] E0719 13:43:07.004085 139663816972096 hhblits.py:141] - 12:46:34.965 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011602 139929070653184 run_docker.py:180] E0719 13:43:07.004172 139663816972096 hhblits.py:141] - 12:53:54.008 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011677 139929070653184 run_docker.py:180] E0719 13:43:07.004262 139663816972096 hhblits.py:141] - 12:53:54.321 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011754 139929070653184 run_docker.py:180] E0719 13:43:07.004355 139663816972096 hhblits.py:141] - 12:53:56.206 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011850 139929070653184 run_docker.py:180] E0719 13:43:07.004451 139663816972096 hhblits.py:141] - 12:55:03.796 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.011927 139929070653184 run_docker.py:180] E0719 13:43:07.004542 139663816972096 hhblits.py:141] - 12:55:15.672 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.012003 139929070653184 run_docker.py:180] E0719 13:43:07.004638 139663816972096 hhblits.py:141] - 12:55:23.622 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.012079 139929070653184 run_docker.py:180] E0719 13:43:07.004725 139663816972096 hhblits.py:141] - 12:56:17.994 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.012210 139929070653184 run_docker.py:180] E0719 13:43:07.004823 139663816972096 hhblits.py:141] - 12:56:59.251 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.012288 139929070653184 run_docker.py:180] E0719 13:43:07.004910 139663816972096 hhblits.py:141] - 12:57:25.222 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.012364 139929070653184 run_docker.py:180] E0719 13:43:07.005010 139663816972096 hhblits.py:141] - 13:05:31.120 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.012440 139929070653184 run_docker.py:180] E0719 13:43:07.005115 139663816972096 hhblits.py:141] - 13:05:46.715 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.012516 139929070653184 run_docker.py:180] E0719 13:43:07.005204 139663816972096 hhblits.py:141] - 13:27:51.596 INFO: 78950 sequences belonging to 78950 database HMMs found with an E-value < 0.001
I0719 14:43:07.012593 139929070653184 run_docker.py:180] E0719 13:43:07.005295 139663816972096 hhblits.py:141] - 13:27:51.596 INFO: Number of effective sequences of resulting query HMM: Neff = 12.0749
I0719 14:43:07.012669 139929070653184 run_docker.py:180] E0719 13:43:07.005404 139663816972096 hhblits.py:141] - 13:27:53.304 INFO: Iteration 2
I0719 14:43:07.012746 139929070653184 run_docker.py:180] E0719 13:43:07.005511 139663816972096 hhblits.py:141] - 13:27:53.304 INFO: Set premerge to 0! (premerge: 3 iteration: 2 hits.Size: 78947)
I0719 14:43:07.012824 139929070653184 run_docker.py:180] E0719 13:43:07.005602 139663816972096 hhblits.py:141] - 13:27:53.580 INFO: Prefiltering database
I0719 14:43:07.012901 139929070653184 run_docker.py:180] E0719 13:43:07.005692 139663816972096 hhblits.py:141] - 13:32:48.868 INFO: HMMs passed 1st prefilter (gapless profile-profile alignment)  : 1354381
I0719 14:43:07.012977 139929070653184 run_docker.py:180] E0719 13:43:07.005800 139663816972096 hhblits.py:141] - 13:32:55.788 WARNING: Number of hits passing 2nd prefilter (reduced from 110037 to allowed maximum of 100000).
I0719 14:43:07.013055 139929070653184 run_docker.py:180] E0719 13:43:07.005887 139663816972096 hhblits.py:141] You can increase the allowed maximum using the -maxfilt <max> option.
I0719 14:43:07.013131 139929070653184 run_docker.py:180] E0719 13:43:07.005982 139663816972096 hhblits.py:141] - 13:34:30.617 INFO: HMMs passed 1st prefilter (gapless profile-profile alignment)  : 325485
I0719 14:43:07.013208 139929070653184 run_docker.py:180] E0719 13:43:07.006070 139663816972096 hhblits.py:141] - 13:34:33.457 WARNING: database contains sequences that exceed maximum allowed size (maxres = 20001). Max sequence length can be increased with parameter -maxres.
I0719 14:43:07.013286 139929070653184 run_docker.py:180] E0719 13:43:07.006166 139663816972096 hhblits.py:141] - 13:34:33.457 INFO: HMMs passed 2nd prefilter (gapped profile-profile alignment)   : 128902
I0719 14:43:07.013361 139929070653184 run_docker.py:180] E0719 13:43:07.006253 139663816972096 hhblits.py:141] - 13:34:33.457 INFO: HMMs passed 2nd prefilter and not found in previous iterations : 61986
I0719 14:43:07.013438 139929070653184 run_docker.py:180] E0719 13:43:07.006333 139663816972096 hhblits.py:141] - 13:34:33.457 INFO: Scoring 61986 HMMs using HMM-HMM Viterbi alignment
I0719 14:43:07.013514 139929070653184 run_docker.py:180] E0719 13:43:07.006417 139663816972096 hhblits.py:141] - 13:34:33.715 INFO: Alternative alignment: 0
I0719 14:43:07.013591 139929070653184 run_docker.py:180] E0719 13:43:07.006506 139663816972096 hhblits.py:141] - 13:34:38.698 INFO: 2000 alignments done
I0719 14:43:07.013667 139929070653184 run_docker.py:180] E0719 13:43:07.006582 139663816972096 hhblits.py:141] - 13:34:42.827 INFO: 4000 alignments done
I0719 14:43:07.013743 139929070653184 run_docker.py:180] E0719 13:43:07.006657 139663816972096 hhblits.py:141] - 13:34:46.685 INFO: 6000 alignments done
I0719 14:43:07.013820 139929070653184 run_docker.py:180] E0719 13:43:07.006732 139663816972096 hhblits.py:141] - 13:34:50.760 INFO: 8000 alignments done
I0719 14:43:07.013898 139929070653184 run_docker.py:180] E0719 13:43:07.006806 139663816972096 hhblits.py:141] - 13:34:54.777 INFO: 10000 alignments done
I0719 14:43:07.013974 139929070653184 run_docker.py:180] E0719 13:43:07.006881 139663816972096 hhblits.py:141] - 13:34:58.748 INFO: 12000 alignments done
I0719 14:43:07.014051 139929070653184 run_docker.py:180] E0719 13:43:07.006974 139663816972096 hhblits.py:141] - 13:35:02.548 INFO: 14000 alignments done
I0719 14:43:07.014127 139929070653184 run_docker.py:180] E0719 13:43:07.007049 139663816972096 hhblits.py:141] - 13:35:06.457 INFO: 16000 alignments done
I0719 14:43:07.014204 139929070653184 run_docker.py:180] E0719 13:43:07.007124 139663816972096 hhblits.py:141] - 13:35:10.258 INFO: 18000 alignments done
I0719 14:43:07.014280 139929070653184 run_docker.py:180] E0719 13:43:07.007199 139663816972096 hhblits.py:141] - 13:35:13.945 INFO: 20000 alignments done
I0719 14:43:07.014355 139929070653184 run_docker.py:180] E0719 13:43:07.007273 139663816972096 hhblits.py:141] - 13:35:17.580 INFO: 22000 alignments done
I0719 14:43:07.014430 139929070653184 run_docker.py:180] E0719 13:43:07.007349 139663816972096 hhblits.py:141] - 13:35:21.624 INFO: 24000 alignments done
I0719 14:43:07.014507 139929070653184 run_docker.py:180] E0719 13:43:07.007441 139663816972096 hhblits.py:141] - 13:35:25.509 INFO: 26000 alignments done
I0719 14:43:07.014583 139929070653184 run_docker.py:180] E0719 13:43:07.007534 139663816972096 hhblits.py:141] - 13:35:29.641 INFO: 28000 alignments done
I0719 14:43:07.014659 139929070653184 run_docker.py:180] E0719 13:43:07.007624 139663816972096 hhblits.py:141] - 13:35:33.554 INFO: 30000 alignments done
I0719 14:43:07.014734 139929070653184 run_docker.py:180] E0719 13:43:07.007708 139663816972096 hhblits.py:141] - 13:35:37.520 INFO: 32000 alignments done
I0719 14:43:07.014810 139929070653184 run_docker.py:180] E0719 13:43:07.007807 139663816972096 hhblits.py:141] - 13:35:41.077 INFO: 34000 alignments done
I0719 14:43:07.014886 139929070653184 run_docker.py:180] E0719 13:43:07.007926 139663816972096 hhblits.py:141] - 13:35:45.229 INFO: 36000 alignments done
I0719 14:43:07.014963 139929070653184 run_docker.py:180] E0719 13:43:07.008024 139663816972096 hhblits.py:141] - 13:35:49.127 INFO: 38000 alignments done
I0719 14:43:07.015039 139929070653184 run_docker.py:180] E0719 13:43:07.008088 139663816972096 hhblits.py:141] - 13:35:53.089 INFO: 40000 alignments done
I0719 14:43:07.015115 139929070653184 run_docker.py:180] E0719 13:43:07.008160 139663816972096 hhblits.py:141] - 13:35:57.292 INFO: 42000 alignments done
I0719 14:43:07.015190 139929070653184 run_docker.py:180] E0719 13:43:07.008224 139663816972096 hhblits.py:141] - 13:36:01.183 INFO: 44000 alignments done
I0719 14:43:07.015265 139929070653184 run_docker.py:180] E0719 13:43:07.008282 139663816972096 hhblits.py:141] - 13:36:05.124 INFO: 46000 alignments done
I0719 14:43:07.015341 139929070653184 run_docker.py:180] E0719 13:43:07.008344 139663816972096 hhblits.py:141] - 13:36:09.498 INFO: 48000 alignments done
I0719 14:43:07.015416 139929070653184 run_docker.py:180] E0719 13:43:07.008416 139663816972096 hhblits.py:141] - 13:36:13.466 INFO: 50000 alignments done
I0719 14:43:07.015492 139929070653184 run_docker.py:180] E0719 13:43:07.008487 139663816972096 hhblits.py:141] - 13:36:18.988 INFO: 52000 alignments done
I0719 14:43:07.015569 139929070653184 run_docker.py:180] E0719 13:43:07.008543 139663816972096 hhblits.py:141] - 13:36:22.408 INFO: 54000 alignments done
I0719 14:43:07.015647 139929070653184 run_docker.py:180] E0719 13:43:07.008615 139663816972096 hhblits.py:141] - 13:36:25.739 INFO: 56000 alignments done
I0719 14:43:07.015723 139929070653184 run_docker.py:180] E0719 13:43:07.008685 139663816972096 hhblits.py:141] - 13:36:28.001 INFO: 58000 alignments done
I0719 14:43:07.015803 139929070653184 run_docker.py:180] E0719 13:43:07.008747 139663816972096 hhblits.py:141] - 13:36:32.198 INFO: 60000 alignments done
I0719 14:43:07.015880 139929070653184 run_docker.py:180] E0719 13:43:07.008805 139663816972096 hhblits.py:141] - 13:36:37.607 INFO: 61986 alignments done
I0719 14:43:07.015956 139929070653184 run_docker.py:180] E0719 13:43:07.008864 139663816972096 hhblits.py:141] - 13:36:37.617 INFO: Alternative alignment: 1
I0719 14:43:07.016032 139929070653184 run_docker.py:180] E0719 13:43:07.008922 139663816972096 hhblits.py:141] - 13:36:52.998 INFO: 61852 alignments done
I0719 14:43:07.016109 139929070653184 run_docker.py:180] E0719 13:43:07.008980 139663816972096 hhblits.py:141] - 13:36:53.077 INFO: Alternative alignment: 2
I0719 14:43:07.016194 139929070653184 run_docker.py:180] E0719 13:43:07.009040 139663816972096 hhblits.py:141] - 13:36:54.827 INFO: 3212 alignments done
I0719 14:43:07.016271 139929070653184 run_docker.py:180] E0719 13:43:07.009098 139663816972096 hhblits.py:141] - 13:36:54.830 INFO: Alternative alignment: 3
I0719 14:43:07.016348 139929070653184 run_docker.py:180] E0719 13:43:07.009157 139663816972096 hhblits.py:141] - 13:36:55.040 INFO: 198 alignments done
I0719 14:43:07.016424 139929070653184 run_docker.py:180] E0719 13:43:07.009215 139663816972096 hhblits.py:141] - 13:36:55.942 INFO: Realigning 49894 HMM-HMM alignments using Maximum Accuracy algorithm
I0719 14:43:07.016500 139929070653184 run_docker.py:180] E0719 13:43:07.009273 139663816972096 hhblits.py:141] - 13:38:55.118 WARNING: Number of match columns too large. Only first 19999 match columns will be kept!
I0719 14:43:07.016577 139929070653184 run_docker.py:180] E0719 13:43:07.009330 139663816972096 hhblits.py:141] - 13:43:03.185 ERROR: Error in /tmp/hh-suite/src/hhalignment.cpp:3539: MergeMasterSlave:
I0719 14:43:07.016653 139929070653184 run_docker.py:180] E0719 13:43:07.009389 139663816972096 hhblits.py:141] - 13:43:03.185 ERROR: 	did not find 372 match states in sequence 1 of ERR550514_1169578. Sequence:
I0719 14:43:07.016733 139929070653184 run_docker.py:180] E0719 13:43:07.009447 139663816972096 hhblits.py:141] RSSISRGRTTRPYRTALWLRMAMTSWVHASSTFSLLLALHLTTVGAEQCIEQLGECGAPDSDALEVFHDDEPPANLVSLLQREVLLHRGAGLSVGRHHEQAAAGSNHSRSSTGHAAHEPRGSQSGPKRAKSGATPTSEPIIVRTDLDRTLAGKLADIAKVVHGSMAEMGSVVAGYEDRHLSHVFALVELSSGRHGATGATRTVGARWHVLGSGLVVSLVALVSCFVAFCRHKDQVTKEGEEGSMPVSLPPDTVVSLFQERIIGQPADTALELPGGMHLSYGELAGQVEGLASRIRSAGVGEAAPGVVATLFPEGTTVEHIVCALAVLHAGAVWLPLDPTLSQERLSAALADSGTRLVIT

See linked issue here: soedinglab/hh-suite#277
Solution is to update the version of uniclust