Created
August 31, 2018 17:01
-
-
Save johnsolk/53a21c29a3c007f49b5628371c4faafb to your computer and use it in GitHub Desktop.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
#outputs top 20 barcodes in file, if there are any | |
zcat lane1_sample_L001_R1_001.fastq.gz | head -400000 | grep '^@HWI' | cut -d : -f 10 | sort | uniq -c | sort -nr | head -20 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment