Created
August 29, 2016 01:53
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formatting transcriptome annotations for merging with lists of differentially expressed lists contig ID
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| sed 's_|_-_g' uniprot_sprot.blastx.outfmt6.sig > uniprot_sprot.blastx.outfmt6.fixed.sig | |
| cut -f 1,2,17 uniprot_sprot.blastx.outfmt6.fixed.sig > uniprot_sprot.blastx.outfmt6.fixed.genes.sig | |
| touch uniprot_P_ast_annotations_mansour_hits100DE.tab | |
| for i in $(cut -f 2 P_ast_RNAseq_25pptv35ppt_top100DE.tab); do grep ${i/_/-} uniprot_sprot.blastx.outfmt6.fixed.genes.sig >> uniprot_P_ast_annotations_mansour_hits100DE.tab; done | |
| sed 's/\-/\_/1' uniprot_P_ast_annotations_mansour_hits100DE.tab > uniprot_P_ast_annotations_mansour_hits100DE.fixed.tab |
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