Install polyaxon in kubernetes over archlinux

Introduction

This file explains how to install polyaxon in kubernetes over archlinux

Requirements

In /etc/sysctl.d/99-sysctl.conf set:

net.ipv4.conf.default.rp_filter=1
net.ipv4.conf.all.rp_filter=1

If you don't want to reboot do:

echo 1 > /proc/sys/net/ipv4/conf/default/rp_filter
echo 1 > /proc/sys/net/ipv4/conf/all/rp_filter

Install an aur helper. We will use aurman from now as aur helper. For example:

git clone https://aur.archlinux.org/aurman.git
cd aurman
makepkg
sudo pacman -U aurman*

Install the following packages (some of them are from aur):

kubelet-bin (1.14.1-0)
kubeadm-bin (1.14.1-0)
kubectl-bin (1.14.1-1)
kubernetes-helm-bin (2.13.1-1)
docker (1:18.09.6-1)
nvidia-docker (2.0.3-4)
etcd-bin
ethtool

aurman -S docker etcd-bin kubernetes-helm-bin ethtool nvidia-docker kubelet-bin kubeadm-bin kubectl-bin

Add support for nvidia framework to docker

cat << EOF /tmp/daemon.json
{
    "default-runtime": "nvidia",
    "runtimes": {
        "nvidia": {
            "path": "/usr/bin/nvidia-container-runtime",
            "runtimeArgs": []
        }
    }
}
EOF
sudo cp /tmp/daemon.json /etc/docker/daemon.json

Reload, kubeadm drops drop-ins for kubelet, plus the kubernetes-bin package may have had its own

sudo systemctl daemon-reload

Start kubelet and docker

sudo systemctl start docker
sudo systemctl enable docker
sudo systemctl start kubelet
sudo systemctl enable kubelet

Configure some variables to save typing

This variables depends on the machine you are using. We suppose you have a domain configured that points to your machine IP. We also need to know the local IP of the machine.

export POLYAXON_PASSWORD=my_password
export POLYAXON_SERVER=my_server_name
export DOMAIN=my.domain.com
export LOCAL_IP=192.168.0.2

Configure kubernetes

Reset kubernetes for a fresh start

sudo kubeadm reset

Basic configuration

Init kubernetes. We are using canal so we set the pod-network-cidr to the value expecified in the documentation. You might have problems if you are using the same network.

sudo kubeadm init --pod-network-cidr=10.244.0.0/16

Move the kubernetes admin.conf file to the local user in the machine to use kubelet.

mkdir $HOME/.kube
sudo cp /etc/kubernetes/admin.conf $HOME/.kube/
sudo chown $(id -u):$(id -g) $HOME/.kube/admin.conf
export KUBECONFIG=$HOME/.kube/admin.conf

You might want to add KUBECONFIG to your rc file.

Wait for few seconds until some containers have been started. You can check them with kubectl get pods --all-namespaces

Network configuration

Now we configure canal for the network in kubernetes.

kubectl apply -f https://docs.projectcalico.org/v3.5/getting-started/kubernetes/installation/hosted/canal/canal.yaml

Wait until coredns pods are up and running. Check it with kubectl get pods --all-namespaces | grep coredns.

Untaint master

We can untaint the master node so it can deploy jobs. You must do this if you are only planning to use one node.

kubectl taint nodes --all node-role.kubernetes.io/master-

Install helm

We need helm in order to install packages

kubectl --namespace kube-system create sa tiller
kubectl create clusterrolebinding tiller --clusterrole cluster-admin --serviceaccount=kube-system:tiller
helm init --service-account tiller

You should wait until tiller is ready: kubectl get pods --all-namespaces | grep tiller-deploy.

Configure helm repos

we need some repos in helm for the rest of the process. One for polyaxon and another one for cert-manager

helm repo add polyaxon https://charts.polyaxon.com
helm repo add jetstack https://charts.jetstack.io
helm repo update

Add nvidia capabilities

If you use nvidia cards you need to add support for them in kubernetes:

kubectl create -f https://raw.githubusercontent.com/NVIDIA/k8s-device-plugin/1.0.0-beta/nvidia-device-plugin.yml

And wait until the nvidia plugin is ready: kubectl get pods --all-namespaces | grep nvidia-device

Install nginx-stable

Nginx is going to be our ingress controller and we need it to request the certificates for our server and to expose the polyaxon web and api. Review externalIPs is you are planning to use more than one machine.

kubectl apply -f https://raw.githubusercontent.com/kubernetes/ingress-nginx/master/deploy/mandatory.yaml
cat << EOF > /tmp/service-nodeport.yaml
apiVersion: v1
kind: Service
metadata:
  name: ingress-nginx
  namespace: ingress-nginx
  labels:
    app.kubernetes.io/name: ingress-nginx
    app.kubernetes.io/part-of: ingress-nginx
spec:
  externalTrafficPolicy: Local
  type: NodePort
  externalIPs:
    - LOCAL_IP
  ports:
    - name: http
      port: 80
      targetPort: 80
      protocol: TCP
    - name: https
      port: 443
      targetPort: 443
      protocol: TCP
  selector:
    app.kubernetes.io/name: ingress-nginx
    app.kubernetes.io/part-of: ingress-nginx
---
EOF
kubectl apply -f /tmp/service-nodeport.yaml

We can checkk nginx is working and it has an IP:

kubectl get svc

Install cert-manager

We will use cert-manager for our machine to requests signed certificates. That will add support for ssl. For more information see https://docs.cert-manager.io/en/latest/tutorials/acme/quick-start/index.html

kubectl apply -f https://raw.githubusercontent.com/jetstack/cert-manager/release-0.7/deploy/manifests/00-crds.yaml
kubectl create namespace cert-manager
kubectl label namespace cert-manager certmanager.k8s.io/disable-validation=true

helm install --name cert-manager --namespace cert-manager --version v0.7.2 jetstack/cert-manager

Wait until cert-manager is ready: kubectl get pods --namespace cert-manager | grep webhook

Configure the Issuer for polyaxon

Check the contact email. You will receive emails related with your certificates there. You should also test with the staging acme server first. We only set here the production acme server.

cat <<EOF > /tmp/cert-pod.yaml
apiVersion: certmanager.k8s.io/v1alpha1
kind: Issuer
metadata:
  name: letsencrypt-prod
  namespace: polyaxon
spec:
  acme:
    server: https://acme-v02.api.letsencrypt.org/directory
    email: contact@$DOMAIN
    privateKeySecretRef:
      name: letsencrypt-prod
    http01: {}
---
EOF
kubectl apply -f /tmp/cert-pod.yaml

Wait until the issuer is ready: kubectl describe issuer letsencrypt-prod --namespace polyaxon

Using local directories for all nodes of polyaxon

Configure the nfs directory:

We can add nfs directories to our configuration in case we want to share those directories with all the cluster.

https://wiki.archlinux.org/index.php/NFS#Server

Our nfs directories are /srv/nfs/data/ and /srv/nfs/outputs.

In /etc/exports:

/srv/nfs/data       127.0.0.0/16(rw,sync) 
/srv/nfs/outputs    127.0.0.0/16(rw,sync)

Update it with sudo exportsfs -a

Start and enable the service:

sudo systemctl enable nfs-server.service
sudo systemctl start nfs-server.service

Create persistence volumes for our nfs directories

Adjuts the storage values as needed

cat <<EOF > /tmp/pvcdata.yaml
apiVersion: v1
kind: PersistentVolume
metadata:
  name: polyaxon-pv-data
spec:
  capacity:
    storage: 3Ti
  accessModes:
    - ReadWriteMany
  nfs:
    path: /srv/nfs/data
    server: $POLYAXON_SERVER
    readOnly: false
  claimRef:
    namespace: polyaxon
    name: polyaxon-pvc-data
---
kind: PersistentVolumeClaim
apiVersion: v1
metadata:
  name:  polyaxon-pvc-data
spec:
  accessModes:
    - ReadWriteMany
  resources:
    requests:
      storage: 3Ti
EOF
kubectl create --namespace=polyaxon -f /tmp/pvcdata.yaml

cat <<EOF > /tmp/pvcoutputs.yaml
apiVersion: v1
kind: PersistentVolume
metadata:
  name: polyaxon-pv-outputs
spec:
  capacity:
    storage: 256Gi
  accessModes:
    - ReadWriteMany
  nfs:
    path: /srv/nfs/outputs
    server: $POLYAXON_SERVER
    readOnly: false
  claimRef:
    namespace: polyaxon
    name: polyaxon-pvc-outputs
---
kind: PersistentVolumeClaim
apiVersion: v1
metadata:
  name:  polyaxon-pvc-outputs
spec:
  accessModes:
    - ReadWriteMany
  resources:
    requests:
      storage: 256Gi
EOF
kubectl create --namespace=polyaxon -f /tmp/pvcoutputs.yaml

Wait until the volumes are ready: kubectl get pv polyaxon-pvc-data and kubectl get pv polyaxon-pvc-outputs