Created
October 18, 2023 13:19
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(partial) EasyBuild log for failed build of /tmp/eb-sw0gt_or/files_pr19032/e/emcee/emcee-3.1.4-foss-2022a.eb (PR(s) #19032)
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| == 2023-10-18 15:12:33,028 easyblock.py:313 INFO This is EasyBuild 4.8.1 (framework: 4.8.1, easyblocks: 4.8.1) on host cvmfs1.koios.lan. | |
| == 2023-10-18 15:12:33,028 easyblock.py:319 INFO This is easyblock PythonPackage from module easybuild.easyblocks.generic.pythonpackage (/home/swbuild/.local/lib/python3.11/site-packages/easybuild/easyblocks/generic/pythonpackage.py) | |
| == 2023-10-18 15:12:33,028 easyblock.py:1056 INFO Build dir set to /tmp/eb/emcee/3.1.4/foss-2022a | |
| == 2023-10-18 15:12:33,028 easyblock.py:1113 INFO Software install dir set to /cvmfs/koios.lan/standalone/software/emcee/3.1.4-foss-2022a | |
| == 2023-10-18 15:12:33,028 easyblock.py:1118 INFO Module install dir set to /cvmfs/koios.lan/standalone/modules/all | |
| == 2023-10-18 15:12:33,028 easyblock.py:288 INFO Init completed for application name emcee version 3.1.4 | |
| == 2023-10-18 15:12:33,028 pythonpackage.py:399 INFO Using default value for expected module name (lowercase software name): 'emcee' | |
| == 2023-10-18 15:12:33,028 pythonpackage.py:432 INFO Using pip with --no-deps option | |
| == 2023-10-18 15:12:33,028 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/eb-sw0gt_or (previously undefined) | |
| == 2023-10-18 15:12:33,028 pythonpackage.py:449 INFO Using /tmp/eb-sw0gt_or as pip cache directory | |
| == 2023-10-18 15:12:33,028 pythonpackage.py:464 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command | |
| == 2023-10-18 15:12:33,028 easyblock.py:4220 INFO Obtained application instance of for emcee (easyblock: PythonPackage) | |
| == 2023-10-18 15:12:33,029 easyconfig.py:1693 INFO Generating template values... | |
| == 2023-10-18 15:12:33,029 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-10-18 15:12:33,029 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-10-18 15:12:33,029 easyconfig.py:1712 INFO Template values: arch='x86_64', bitbucket_account='emcee', github_account='emcee', module_name='emcee/3.1.4-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='emcee', nameletter='e', nameletterlower='e', namelower='emcee', toolchain_name='foss', toolchain_version='2022a', version='3.1.4', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2023-10-18 15:12:33,029 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2023-10-18 15:12:33,030 filetools.py:1911 INFO Creating directory /tmp/eb-sw0gt_or/reprod_20231018151233_3591506 (parents: True, set_gid: False, sticky: False) | |
| == 2023-10-18 15:12:33,031 easyblock.py:4474 INFO Dumped easyconfig instance to /tmp/eb-sw0gt_or/reprod_20231018151233_3591506/emcee-3.1.4-foss-2022a.eb | |
| == 2023-10-18 15:12:33,031 filetools.py:1911 INFO Creating directory /tmp/eb-sw0gt_or/reprod_20231018151233_3591506/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2023-10-18 15:12:33,031 filetools.py:2424 INFO /home/swbuild/.local/lib/python3.11/site-packages/easybuild/easyblocks/generic/pythonpackage.py copied to /tmp/eb-sw0gt_or/reprod_20231018151233_3591506/easyblocks/pythonpackage.py | |
| == 2023-10-18 15:12:33,031 easyblock.py:4454 INFO Dumped easyblock pythonpackage.py required for reproduction to /tmp/eb-sw0gt_or/reprod_20231018151233_3591506/easyblocks | |
| == 2023-10-18 15:12:33,032 easyblock.py:2225 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2023-10-18 15:12:33,032 build_log.py:267 INFO building and installing emcee/3.1.4-foss-2022a... | |
| == 2023-10-18 15:12:33,032 filetools.py:2004 INFO Lock /cvmfs/koios.lan/standalone/software/.locks/_cvmfs_koios.lan_standalone_software_emcee_3.1.4-foss-2022a.lock does not exist | |
| == 2023-10-18 15:12:33,033 filetools.py:1945 INFO Creating lock at /cvmfs/koios.lan/standalone/software/.locks/_cvmfs_koios.lan_standalone_software_emcee_3.1.4-foss-2022a.lock... | |
| == 2023-10-18 15:12:33,033 filetools.py:1911 INFO Creating directory /cvmfs/koios.lan/standalone/software/.locks/_cvmfs_koios.lan_standalone_software_emcee_3.1.4-foss-2022a.lock (parents: True, set_gid: False, sticky: False) | |
| == 2023-10-18 15:12:33,033 filetools.py:1954 INFO Lock created: /cvmfs/koios.lan/standalone/software/.locks/_cvmfs_koios.lan_standalone_software_emcee_3.1.4-foss-2022a.lock | |
| == 2023-10-18 15:12:33,033 build_log.py:267 INFO fetching files... | |
| == 2023-10-18 15:12:33,034 easyblock.py:3942 INFO Starting fetch step | |
| == 2023-10-18 15:12:33,034 easyconfig.py:1693 INFO Generating template values... | |
| == 2023-10-18 15:12:33,034 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-10-18 15:12:33,034 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-10-18 15:12:33,034 easyconfig.py:1712 INFO Template values: arch='x86_64', bitbucket_account='emcee', builddir='/tmp/eb/emcee/3.1.4/foss-2022a', github_account='emcee', installdir='/cvmfs/koios.lan/standalone/software/emcee/3.1.4-foss-2022a', module_name='emcee/3.1.4-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='emcee', nameletter='e', nameletterlower='e', namelower='emcee', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='3.1.4', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2023-10-18 15:12:33,034 easyblock.py:3950 INFO Running method fetch_step part of step fetch | |
| == 2023-10-18 15:12:33,034 easyblock.py:2347 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2023-10-18 15:12:33,035 easyblock.py:809 INFO Considering directory in which easyconfig file is located when searching for emcee-3.1.4.tar.gz: /tmp/eb-sw0gt_or/files_pr19032/e/emcee | |
| == 2023-10-18 15:12:33,035 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/swbuild/.local/bin/eb | |
| == 2023-10-18 15:12:33,035 tools.py:287 INFO Also considering installation prefix /home/swbuild/.local (determined via path to 'eb' script)... | |
| == 2023-10-18 15:12:33,036 filetools.py:1911 INFO Creating directory /cvmfs/koios.lan/standalone/sources/e/emcee (parents: True, set_gid: False, sticky: False) | |
| == 2023-10-18 15:12:33,377 filetools.py:816 INFO File size for https://pypi.python.org/simple/emcee: 9433 | |
| == 2023-10-18 15:12:33,377 filetools.py:270 INFO Not showing progress bar for downloading small file (size 9433) | |
| == 2023-10-18 15:12:33,378 filetools.py:823 INFO Downloaded file emcee_urls.html from url https://pypi.python.org/simple/emcee to /tmp/eb-sw0gt_or/tmp2ql9sfzg/emcee_urls.html | |
| == 2023-10-18 15:12:33,378 filetools.py:855 INFO Successful download of file emcee_urls.html from url https://pypi.python.org/simple/emcee to path /tmp/eb-sw0gt_or/tmp2ql9sfzg/emcee_urls.html | |
| == 2023-10-18 15:12:33,734 filetools.py:816 INFO File size for https://pypi.python.org/packages/56/62/f8268fe4cf6f8af3860617a53e935e195ce7406d0b10f3ab0fb85bf17533/emcee-3.1.4.tar.gz: 2869179 | |
| == 2023-10-18 15:12:33,734 filetools.py:270 INFO Not showing progress bar for downloading small file (size 2869179) | |
| == 2023-10-18 15:12:33,989 filetools.py:823 INFO Downloaded file emcee-3.1.4.tar.gz from url https://pypi.python.org/packages/56/62/f8268fe4cf6f8af3860617a53e935e195ce7406d0b10f3ab0fb85bf17533/emcee-3.1.4.tar.gz to /cvmfs/koios.lan/standalone/sources/e/emcee/emcee-3.1.4.tar.gz | |
| == 2023-10-18 15:12:33,989 filetools.py:855 INFO Successful download of file emcee-3.1.4.tar.gz from url https://pypi.python.org/packages/56/62/f8268fe4cf6f8af3860617a53e935e195ce7406d0b10f3ab0fb85bf17533/emcee-3.1.4.tar.gz to path /cvmfs/koios.lan/standalone/sources/e/emcee/emcee-3.1.4.tar.gz | |
| == 2023-10-18 15:12:33,990 easyblock.py:951 INFO Successfully downloaded source file emcee-3.1.4.tar.gz from https://pypi.python.org/packages/56/62/f8268fe4cf6f8af3860617a53e935e195ce7406d0b10f3ab0fb85bf17533/emcee-3.1.4.tar.gz | |
| == 2023-10-18 15:12:33,990 easyblock.py:496 INFO Added sources: [{'name': 'emcee-3.1.4.tar.gz', 'path': '/cvmfs/koios.lan/standalone/sources/e/emcee/emcee-3.1.4.tar.gz', 'cmd': None, 'checksum': '8e0e19dc8bcef9c6d02f860bef8ddc6c876b8878a6ce666943e2c5cfd9317fed', 'finalpath': '/tmp/eb/emcee/3.1.4/foss-2022a'}] | |
| == 2023-10-18 15:12:33,990 easyblock.py:2390 INFO no patches provided | |
| == 2023-10-18 15:12:33,998 easyblock.py:2400 INFO md5 checksum for /cvmfs/koios.lan/standalone/sources/e/emcee/emcee-3.1.4.tar.gz: b8e2cd950501fc9779f3e0530b24cfea | |
| == 2023-10-18 15:12:34,006 easyblock.py:2400 INFO sha256 checksum for /cvmfs/koios.lan/standalone/sources/e/emcee/emcee-3.1.4.tar.gz: 8e0e19dc8bcef9c6d02f860bef8ddc6c876b8878a6ce666943e2c5cfd9317fed | |
| == 2023-10-18 15:12:34,006 easyblock.py:2435 INFO Checking dirs that need to be created: ['/cvmfs/koios.lan/standalone/software/emcee/3.1.4-foss-2022a', '/cvmfs/koios.lan/standalone/modules/all/emcee', '/cvmfs/koios.lan/standalone/modules/astro/emcee'] | |
| == 2023-10-18 15:12:34,006 filetools.py:1911 INFO Creating directory /cvmfs/koios.lan/standalone/software/emcee/3.1.4-foss-2022a (parents: True, set_gid: False, sticky: False) | |
| == 2023-10-18 15:12:34,006 filetools.py:1911 INFO Creating directory /cvmfs/koios.lan/standalone/modules/all/emcee (parents: True, set_gid: False, sticky: False) | |
| == 2023-10-18 15:12:34,007 filetools.py:1911 INFO Creating directory /cvmfs/koios.lan/standalone/modules/astro/emcee (parents: True, set_gid: False, sticky: False) | |
| == 2023-10-18 15:12:34,007 build_log.py:267 INFO creating build dir, resetting environment... | |
| == 2023-10-18 15:12:34,007 easyblock.py:3942 INFO Starting ready step | |
| == 2023-10-18 15:12:34,008 easyconfig.py:1693 INFO Generating template values... | |
| == 2023-10-18 15:12:34,008 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-10-18 15:12:34,008 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-10-18 15:12:34,008 easyconfig.py:1712 INFO Template values: arch='x86_64', bitbucket_account='emcee', builddir='/tmp/eb/emcee/3.1.4/foss-2022a', github_account='emcee', installdir='/cvmfs/koios.lan/standalone/software/emcee/3.1.4-foss-2022a', module_name='emcee/3.1.4-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='emcee', nameletter='e', nameletterlower='e', namelower='emcee', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='3.1.4', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2023-10-18 15:12:34,008 easyblock.py:3950 INFO Running method check_readiness_step part of step ready | |
| == 2023-10-18 15:12:34,010 run.py:246 INFO running cmd: ulimit -u | |
| == 2023-10-18 15:12:34,013 easyblock.py:2244 INFO Setting parallelism: 16 | |
| == 2023-10-18 15:12:34,045 easyblock.py:3950 INFO Running method make_builddir part of step ready | |
| == 2023-10-18 15:12:34,045 filetools.py:1911 INFO Creating directory /tmp/eb/emcee/3.1.4/foss-2022a (parents: True, set_gid: False, sticky: False) | |
| == 2023-10-18 15:12:34,046 easyblock.py:3950 INFO Running method reset_env part of step ready | |
| == 2023-10-18 15:12:34,046 easyblock.py:3950 INFO Running method handle_iterate_opts part of step ready | |
| == 2023-10-18 15:12:34,046 easyconfig.py:1693 INFO Generating template values... | |
| == 2023-10-18 15:12:34,046 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-10-18 15:12:34,046 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-10-18 15:12:34,046 easyconfig.py:1712 INFO Template values: arch='x86_64', bitbucket_account='emcee', builddir='/tmp/eb/emcee/3.1.4/foss-2022a', github_account='emcee', installdir='/cvmfs/koios.lan/standalone/software/emcee/3.1.4-foss-2022a', module_name='emcee/3.1.4-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='emcee', nameletter='e', nameletterlower='e', namelower='emcee', parallel='16', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='3.1.4', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2023-10-18 15:12:34,047 build_log.py:267 INFO unpacking... | |
| == 2023-10-18 15:12:34,047 easyblock.py:3942 INFO Starting source step | |
| == 2023-10-18 15:12:34,047 easyconfig.py:1693 INFO Generating template values... | |
| == 2023-10-18 15:12:34,047 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-10-18 15:12:34,047 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-10-18 15:12:34,047 easyconfig.py:1712 INFO Template values: arch='x86_64', bitbucket_account='emcee', builddir='/tmp/eb/emcee/3.1.4/foss-2022a', github_account='emcee', installdir='/cvmfs/koios.lan/standalone/software/emcee/3.1.4-foss-2022a', module_name='emcee/3.1.4-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='emcee', nameletter='e', nameletterlower='e', namelower='emcee', parallel='16', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='3.1.4', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2023-10-18 15:12:34,047 easyblock.py:3950 INFO Running method checksum_step part of step source | |
| == 2023-10-18 15:12:34,055 easyblock.py:2453 INFO Checksum verification for /cvmfs/koios.lan/standalone/sources/e/emcee/emcee-3.1.4.tar.gz using 8e0e19dc8bcef9c6d02f860bef8ddc6c876b8878a6ce666943e2c5cfd9317fed passed. | |
| == 2023-10-18 15:12:34,055 easyblock.py:3950 INFO Running method extract_step part of step source | |
| == 2023-10-18 15:12:34,055 easyblock.py:2565 INFO Unpacking source emcee-3.1.4.tar.gz | |
| == 2023-10-18 15:12:34,055 run.py:246 INFO running cmd: tar xzf /cvmfs/koios.lan/standalone/sources/e/emcee/emcee-3.1.4.tar.gz | |
| == 2023-10-18 15:12:34,098 build_log.py:267 INFO patching... | |
| == 2023-10-18 15:12:34,098 easyblock.py:3942 INFO Starting patch step | |
| == 2023-10-18 15:12:34,098 easyconfig.py:1693 INFO Generating template values... | |
| == 2023-10-18 15:12:34,099 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-10-18 15:12:34,099 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-10-18 15:12:34,099 easyconfig.py:1712 INFO Template values: arch='x86_64', bitbucket_account='emcee', builddir='/tmp/eb/emcee/3.1.4/foss-2022a', github_account='emcee', installdir='/cvmfs/koios.lan/standalone/software/emcee/3.1.4-foss-2022a', module_name='emcee/3.1.4-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='emcee', nameletter='e', nameletterlower='e', namelower='emcee', parallel='16', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='3.1.4', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2023-10-18 15:12:34,099 easyblock.py:3950 INFO Running method patch_step part of step patch | |
| == 2023-10-18 15:12:34,099 build_log.py:267 INFO preparing... | |
| == 2023-10-18 15:12:34,099 easyblock.py:3942 INFO Starting prepare step | |
| == 2023-10-18 15:12:34,099 easyconfig.py:1693 INFO Generating template values... | |
| == 2023-10-18 15:12:34,099 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-10-18 15:12:34,099 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-10-18 15:12:34,099 easyconfig.py:1712 INFO Template values: arch='x86_64', bitbucket_account='emcee', builddir='/tmp/eb/emcee/3.1.4/foss-2022a', github_account='emcee', installdir='/cvmfs/koios.lan/standalone/software/emcee/3.1.4-foss-2022a', module_name='emcee/3.1.4-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='emcee', nameletter='e', nameletterlower='e', namelower='emcee', parallel='16', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='3.1.4', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2023-10-18 15:12:34,100 easyblock.py:3950 INFO Running method prepare_step part of step prepare | |
| == 2023-10-18 15:12:34,132 modules.py:626 INFO Checking whether SciPy-bundle/2022.05-foss-2022a exists... | |
| == 2023-10-18 15:12:34,132 modules.py:633 INFO Module SciPy-bundle/2022.05-foss-2022a not found in list of available modules, checking via 'module show'... | |
| == 2023-10-18 15:12:34,164 modules.py:647 INFO Module SciPy-bundle/2022.05-foss-2022a not found via module avail/show, checking whether it is a wrapper | |
| == 2023-10-18 15:12:34,164 modules.py:654 INFO Result for existence check of SciPy-bundle/2022.05-foss-2022a module: False | |
| == 2023-10-18 15:12:34,189 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): Missing modules for dependencies (use --robot?): SciPy-bundle/2022.05-foss-2022a (at easybuild/tools/toolchain/toolchain.py:559 in _check_dependencies) | |
| == 2023-10-18 15:12:34,192 filetools.py:2012 INFO Removing lock /cvmfs/koios.lan/standalone/software/.locks/_cvmfs_koios.lan_standalone_software_emcee_3.1.4-foss-2022a.lock... | |
| == 2023-10-18 15:12:34,192 filetools.py:383 INFO Path /cvmfs/koios.lan/standalone/software/.locks/_cvmfs_koios.lan_standalone_software_emcee_3.1.4-foss-2022a.lock successfully removed. | |
| == 2023-10-18 15:12:34,192 filetools.py:2016 INFO Lock removed: /cvmfs/koios.lan/standalone/software/.locks/_cvmfs_koios.lan_standalone_software_emcee_3.1.4-foss-2022a.lock | |
| == 2023-10-18 15:12:34,193 easyblock.py:4277 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): SciPy-bundle/2022.05-foss-2022a | |
| == 2023-10-18 15:12:34,193 easyblock.py:328 INFO Closing log for application name emcee version 3.1.4 |
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