Created
January 11, 2019 20:25
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(partial) EasyBuild log for failed build of /tmp/eb-weZ5Ux/files_pr7405/s/sympy/sympy-1.3-intel-2018a-Python-2.7.14.eb (PR #7405)
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| == 2019-01-11 21:25:19,574 easyblock.py:271 INFO This is EasyBuild 3.8.0 (framework: 3.8.0, easyblocks: 3.8.0) on host koios1. | |
| == 2019-01-11 21:25:19,574 easyblock.py:277 INFO This is easyblock PythonPackage from module easybuild.easyblocks.generic.pythonpackage (/home/users/jose/.local/easybuild/software/tools/EasyBuild/3.8.0/lib/python2.7/site-packages/easybuild_easyblocks-3.8.0-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.pyo) | |
| == 2019-01-11 21:25:19,574 easyblock.py:831 INFO Build dir set to /dev/shm/jose/ebtest/sympy/1.3/intel-2018a-Python-2.7.14 | |
| == 2019-01-11 21:25:19,574 easyblock.py:872 INFO Software install dir set to /home/users/jose/.local/easybuild/software/math/sympy/1.3-intel-2018a-Python-2.7.14 | |
| == 2019-01-11 21:25:19,575 easyblock.py:877 INFO Module install dir set to /home/users/jose/.local/easybuild/modules/all | |
| == 2019-01-11 21:25:19,575 easyblock.py:256 INFO Init completed for application name sympy version 1.3 | |
| == 2019-01-11 21:25:19,575 pythonpackage.py:224 INFO Using default value for expected module name (lowercase software name): 'sympy' | |
| == 2019-01-11 21:25:19,575 pythonpackage.py:254 INFO Using pip with --no-deps option | |
| == 2019-01-11 21:25:19,575 easyblock.py:2834 INFO Obtained application instance of for sympy (easyblock: PythonPackage) | |
| == 2019-01-11 21:25:19,576 one.py:145 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2019-01-11 21:25:19,578 easyblock.py:3003 INFO Dumped easyconfig instance to /tmp/eb-weZ5Ux/reprod/sympy-1.3-intel-2018a-Python-2.7.14.eb | |
| == 2019-01-11 21:25:19,579 filetools.py:1671 INFO /home/users/jose/.local/easybuild/software/tools/EasyBuild/3.8.0/lib/python2.7/site-packages/easybuild_easyblocks-3.8.0-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.py copied to /tmp/eb-weZ5Ux/reprod/easyblocks/pythonpackage.py | |
| == 2019-01-11 21:25:19,579 easyblock.py:3018 INFO Dumped easyblock pythonpackage.py required for reproduction to /tmp/eb-weZ5Ux/reprod/easyblocks | |
| == 2019-01-11 21:25:19,579 build_log.py:251 INFO building and installing math/sympy/1.3-intel-2018a-Python-2.7.14... | |
| == 2019-01-11 21:25:19,580 build_log.py:251 INFO fetching files... | |
| == 2019-01-11 21:25:19,580 easyblock.py:2610 INFO Starting fetch step | |
| == 2019-01-11 21:25:19,580 easyblock.py:2616 INFO Running method fetch_step part of step fetch | |
| == 2019-01-11 21:25:19,580 easyblock.py:1591 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2019-01-11 21:25:19,580 filetools.py:394 INFO Command eb found at /home/users/jose/.local/easybuild/software/tools/EasyBuild/3.8.0/bin/eb | |
| == 2019-01-11 21:25:19,584 easyblock.py:659 INFO Found file sympy-1.3.tar.gz at /home/users/jose/Downloads/s/sympy/sympy-1.3.tar.gz | |
| == 2019-01-11 21:25:19,584 easyblock.py:385 INFO Added sources: [{'path': '/home/users/jose/Downloads/s/sympy/sympy-1.3.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/jose/ebtest/sympy/1.3/intel-2018a-Python-2.7.14', 'name': 'sympy-1.3.tar.gz', 'checksum': 'e1319b556207a3758a0efebae14e5e52c648fc1db8975953b05fff12b6871b54'}] | |
| == 2019-01-11 21:25:19,584 filetools.py:394 INFO Command eb found at /home/users/jose/.local/easybuild/software/tools/EasyBuild/3.8.0/bin/eb | |
| == 2019-01-11 21:25:19,586 easyblock.py:659 INFO Found file sympy-1.3_symlink.patch at /home/users/jose/.local/easybuild/software/tools/EasyBuild/3.8.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.8.0-py2.7.egg/easybuild/easyconfigs/s/sympy/sympy-1.3_symlink.patch | |
| == 2019-01-11 21:25:19,586 easyblock.py:451 INFO Added patches: [{'path': '/home/users/jose/.local/easybuild/software/tools/EasyBuild/3.8.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.8.0-py2.7.egg/easybuild/easyconfigs/s/sympy/sympy-1.3_symlink.patch', 'name': 'sympy-1.3_symlink.patch', 'checksum': 'da206b32058718d962780567518d81d8cd6288ecfa03613370dac875fec0083a'}] | |
| == 2019-01-11 21:25:19,600 easyblock.py:1642 INFO md5 checksum for /home/users/jose/Downloads/s/sympy/sympy-1.3.tar.gz: 11e18423f52e248108a3bd4307185bc1 | |
| == 2019-01-11 21:25:19,615 easyblock.py:1642 INFO sha256 checksum for /home/users/jose/Downloads/s/sympy/sympy-1.3.tar.gz: e1319b556207a3758a0efebae14e5e52c648fc1db8975953b05fff12b6871b54 | |
| == 2019-01-11 21:25:19,615 easyblock.py:1642 INFO md5 checksum for /home/users/jose/.local/easybuild/software/tools/EasyBuild/3.8.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.8.0-py2.7.egg/easybuild/easyconfigs/s/sympy/sympy-1.3_symlink.patch: cd8759dfaee3d950091ad994c43db7d6 | |
| == 2019-01-11 21:25:19,615 easyblock.py:1642 INFO sha256 checksum for /home/users/jose/.local/easybuild/software/tools/EasyBuild/3.8.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.8.0-py2.7.egg/easybuild/easyconfigs/s/sympy/sympy-1.3_symlink.patch: da206b32058718d962780567518d81d8cd6288ecfa03613370dac875fec0083a | |
| == 2019-01-11 21:25:19,616 easyblock.py:1677 INFO Checking dirs that need to be created: ['/home/users/jose/.local/easybuild/software/math/sympy/1.3-intel-2018a-Python-2.7.14', '/home/users/jose/.local/easybuild/modules/all/math/sympy', '/home/users/jose/.local/easybuild/modules/math/math/sympy'] | |
| == 2019-01-11 21:25:19,617 filetools.py:1201 INFO Creating directory /home/users/jose/.local/easybuild/software/math/sympy/1.3-intel-2018a-Python-2.7.14 (parents: True, set_gid: False, sticky: False) | |
| == 2019-01-11 21:25:19,636 build_log.py:251 INFO creating build dir, resetting environment... | |
| == 2019-01-11 21:25:19,636 easyblock.py:2610 INFO Starting ready step | |
| == 2019-01-11 21:25:19,637 easyblock.py:2616 INFO Running method check_readiness_step part of step ready | |
| == 2019-01-11 21:25:19,638 easyblock.py:1529 INFO Setting parallelism: 64 | |
| == 2019-01-11 21:25:19,691 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2019-01-11 21:25:19,691 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-01-11 21:25:19,691 easyblock.py:1543 WARNING Loaded modules detected: ['tools/EasyBuild/3.8.0'] | |
| == 2019-01-11 21:25:19,692 easyblock.py:2616 INFO Running method make_builddir part of step ready | |
| == 2019-01-11 21:25:19,692 filetools.py:1201 INFO Creating directory /dev/shm/jose/ebtest/sympy/1.3/intel-2018a-Python-2.7.14 (parents: True, set_gid: False, sticky: False) | |
| == 2019-01-11 21:25:19,693 easyblock.py:2616 INFO Running method env_reset_changes part of step ready | |
| == 2019-01-11 21:25:19,693 easyblock.py:2616 INFO Running method handle_iterate_opts part of step ready | |
| == 2019-01-11 21:25:19,693 build_log.py:251 INFO unpacking... | |
| == 2019-01-11 21:25:19,693 easyblock.py:2610 INFO Starting source step | |
| == 2019-01-11 21:25:19,694 easyblock.py:2616 INFO Running method checksum_step part of step source | |
| == 2019-01-11 21:25:19,720 easyblock.py:1693 INFO Checksum verification for /home/users/jose/Downloads/s/sympy/sympy-1.3.tar.gz using e1319b556207a3758a0efebae14e5e52c648fc1db8975953b05fff12b6871b54 passed. | |
| == 2019-01-11 21:25:19,721 easyblock.py:1693 INFO Checksum verification for /home/users/jose/.local/easybuild/software/tools/EasyBuild/3.8.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.8.0-py2.7.egg/easybuild/easyconfigs/s/sympy/sympy-1.3_symlink.patch using da206b32058718d962780567518d81d8cd6288ecfa03613370dac875fec0083a passed. | |
| == 2019-01-11 21:25:19,721 easyblock.py:2616 INFO Running method extract_step part of step source | |
| == 2019-01-11 21:25:19,721 easyblock.py:1761 INFO Unpacking source sympy-1.3.tar.gz | |
| == 2019-01-11 21:25:19,722 run.py:192 INFO running cmd: tar xzf /home/users/jose/Downloads/s/sympy/sympy-1.3.tar.gz | |
| == 2019-01-11 21:25:19,897 build_log.py:251 INFO patching... | |
| == 2019-01-11 21:25:19,898 easyblock.py:2610 INFO Starting patch step | |
| == 2019-01-11 21:25:19,898 easyblock.py:2616 INFO Running method patch_step part of step patch | |
| == 2019-01-11 21:25:19,898 easyblock.py:1773 INFO Applying patch sympy-1.3_symlink.patch | |
| == 2019-01-11 21:25:19,900 run.py:192 INFO running cmd: patch -b -p1 -i /home/users/jose/.local/easybuild/software/tools/EasyBuild/3.8.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.8.0-py2.7.egg/easybuild/easyconfigs/s/sympy/sympy-1.3_symlink.patch | |
| == 2019-01-11 21:25:19,910 build_log.py:251 INFO preparing... | |
| == 2019-01-11 21:25:19,910 easyblock.py:2610 INFO Starting prepare step | |
| == 2019-01-11 21:25:19,911 easyblock.py:2616 INFO Running method prepare_step part of step prepare | |
| == 2019-01-11 21:25:19,993 build_log.py:162 ERROR EasyBuild crashed with an error (at easybuild/software/tools/EasyBuild/3.8.0/lib/python2.7/site-packages/vsc_base-2.8.3-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): Missing modules for dependencies (use --robot?): lang/Python/2.7.14-intel-2018a, math/mpmath/1.0.0-intel-2018a-Python-2.7.14 (at easybuild/software/tools/EasyBuild/3.8.0/lib/python2.7/site-packages/easybuild_framework-3.8.0-py2.7.egg/easybuild/tools/toolchain/toolchain.py:416 in _check_dependencies) | |
| == 2019-01-11 21:25:19,993 easyblock.py:2864 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): lang/Python/2.7.14-intel-2018a, math/mpmath/1.0.0-intel-2018a-Python-2.7.14 | |
| == 2019-01-11 21:25:19,993 easyblock.py:286 INFO Closing log for application name sympy version 1.3 |
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