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josePhoenix/eups_install_lsst_apps.log

Created July 25, 2016 20:36
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eups_install_lsst_apps.log
[ 1/62 ] cfitsio 3360.lsst4 ... done.
[ 2/62 ] doxygen 1.8.5.lsst1 (already installed) done.
[ 3/62 ] eigen 3.2.5.lsst1 ... done.
[ 4/62 ] fftw 3.3.4.lsst2 ... done.
[ 5/62 ] gsl 1.16.lsst3 ... done.
[ 6/62 ] mariadbclient 10.1.11.lsst3 ... + setup --type=build -k -r .
++ /astro/ferguson1/jlong/lsststack/eups/bin/eups_setup DYLD_LIBRARY_PATH=/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/lib:/astro/ferguson1/jlong/lsststack/Linux64/cfitsio/3360.lsst4/lib --type=build -k -r .
+ eval export 'MYSQL_INCLUDE_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/include/mysql;' export 'DYLD_LIBRARY_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/lib:/astro/ferguson1/jlong/lsststack/Linux64/cfitsio/3360.lsst4/lib;' export 'SETUP_MARIADBCLIENT='\''mariadbclient' LOCAL:/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3 -f Linux64 -Z '(none)'\'';' export 'LD_LIBRARY_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/lib:/astro/ferguson1/jlong/lsststack/Linux64/cfitsio/3360.lsst4/lib:/opt/rh/devtoolset-3/root/usr/lib64:/opt/rh/devtoolset-3/root/usr/lib:/opt/rh/rh-ruby22/root/usr/lib64;' export 'MARIADBCLIENT_DIR=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3;' export 'PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/bin:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/bin:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/bin:/astro/ferguson1/jlong/lsststack/Linux64/doxygen/1.8.5.lsst1/bin:/astro/ferguson1/jlong/lsststack/eups/bin:/astro/ferguson1/jlong/lsststack/Linux64/lsst/2016_01.0-8-g0fc2317+2/bin:/astro/ferguson1/jlong/lsststack/Linux64/scons/2.3.5/bin:/astro/ferguson1/jlong/lsststack/Linux64/sconsUtils/2016_01.0-4-g49bc714/bin:/astro/ferguson1/jlong/lsststack/Linux64/miniconda2/3.19.0.lsst4/bin:/user/jlong/miniconda3/bin:/user/jlong/.linuxbrew/bin:/opt/rh/devtoolset-3/root/usr/bin:/opt/rh/rh-ruby22/root/usr/bin:/opt/rh/git19/root/usr/bin:/home/jlong/bin:/usr/local/bin:/opt/rh/rh-java-common/root/usr/bin:/usr/lib64/qt-3.3/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/grp/software/Linux/Wolfram/Mathematica/9.0/bin:/grp/software/Linux/RH6/x86_64/sm-2.4.36/bin;' export LSST_LIBRARY_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/lib:/astro/ferguson1/jlong/lsststack/Linux64/cfitsio/3360.lsst4/lib
++ export MYSQL_INCLUDE_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/include/mysql
++ MYSQL_INCLUDE_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/include/mysql
++ export DYLD_LIBRARY_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/lib:/astro/ferguson1/jlong/lsststack/Linux64/cfitsio/3360.lsst4/lib
++ DYLD_LIBRARY_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/lib:/astro/ferguson1/jlong/lsststack/Linux64/cfitsio/3360.lsst4/lib
++ export 'SETUP_MARIADBCLIENT=mariadbclient LOCAL:/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3 -f Linux64 -Z (none)'
++ SETUP_MARIADBCLIENT='mariadbclient LOCAL:/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3 -f Linux64 -Z (none)'
++ export LD_LIBRARY_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/lib:/astro/ferguson1/jlong/lsststack/Linux64/cfitsio/3360.lsst4/lib:/opt/rh/devtoolset-3/root/usr/lib64:/opt/rh/devtoolset-3/root/usr/lib:/opt/rh/rh-ruby22/root/usr/lib64
++ LD_LIBRARY_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/lib:/astro/ferguson1/jlong/lsststack/Linux64/cfitsio/3360.lsst4/lib:/opt/rh/devtoolset-3/root/usr/lib64:/opt/rh/devtoolset-3/root/usr/lib:/opt/rh/rh-ruby22/root/usr/lib64
++ export MARIADBCLIENT_DIR=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3
++ MARIADBCLIENT_DIR=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3
++ export PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/bin:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/bin:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/bin:/astro/ferguson1/jlong/lsststack/Linux64/doxygen/1.8.5.lsst1/bin:/astro/ferguson1/jlong/lsststack/eups/bin:/astro/ferguson1/jlong/lsststack/Linux64/lsst/2016_01.0-8-g0fc2317+2/bin:/astro/ferguson1/jlong/lsststack/Linux64/scons/2.3.5/bin:/astro/ferguson1/jlong/lsststack/Linux64/sconsUtils/2016_01.0-4-g49bc714/bin:/astro/ferguson1/jlong/lsststack/Linux64/miniconda2/3.19.0.lsst4/bin:/user/jlong/miniconda3/bin:/user/jlong/.linuxbrew/bin:/opt/rh/devtoolset-3/root/usr/bin:/opt/rh/rh-ruby22/root/usr/bin:/opt/rh/git19/root/usr/bin:/home/jlong/bin:/usr/local/bin:/opt/rh/rh-java-common/root/usr/bin:/usr/lib64/qt-3.3/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/grp/software/Linux/Wolfram/Mathematica/9.0/bin:/grp/software/Linux/RH6/x86_64/sm-2.4.36/bin
++ PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/bin:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/bin:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/bin:/astro/ferguson1/jlong/lsststack/Linux64/doxygen/1.8.5.lsst1/bin:/astro/ferguson1/jlong/lsststack/eups/bin:/astro/ferguson1/jlong/lsststack/Linux64/lsst/2016_01.0-8-g0fc2317+2/bin:/astro/ferguson1/jlong/lsststack/Linux64/scons/2.3.5/bin:/astro/ferguson1/jlong/lsststack/Linux64/sconsUtils/2016_01.0-4-g49bc714/bin:/astro/ferguson1/jlong/lsststack/Linux64/miniconda2/3.19.0.lsst4/bin:/user/jlong/miniconda3/bin:/user/jlong/.linuxbrew/bin:/opt/rh/devtoolset-3/root/usr/bin:/opt/rh/rh-ruby22/root/usr/bin:/opt/rh/git19/root/usr/bin:/home/jlong/bin:/usr/local/bin:/opt/rh/rh-java-common/root/usr/bin:/usr/lib64/qt-3.3/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/grp/software/Linux/Wolfram/Mathematica/9.0/bin:/grp/software/Linux/RH6/x86_64/sm-2.4.36/bin
++ export LSST_LIBRARY_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/lib:/astro/ferguson1/jlong/lsststack/Linux64/cfitsio/3360.lsst4/lib
++ LSST_LIBRARY_PATH=/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/mariadbclient-10.1.11.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/gsl/1.16.lsst3/lib:/astro/ferguson1/jlong/lsststack/Linux64/fftw/3.3.4.lsst2/lib:/astro/ferguson1/jlong/lsststack/Linux64/cfitsio/3360.lsst4/lib
+ ./ups/eupspkg FLAVOR=Linux64 VERBOSE=0 config
cmake: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
+ exit -3
***** error: from /astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/build.log:
eups distrib: Failed to build mariadbclient-10.1.11.lsst3.eupspkg: Command:
source /astro/ferguson1/jlong/lsststack/eups/bin/setups.sh; export EUPS_PATH=/astro/ferguson1/jlong/lsststack; (/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/build.sh) >> /astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/build.log 2>&1 4>/astro/ferguson1/jlong/lsststack/EupsBuildDir/Linux64/mariadbclient-10.1.11.lsst3/build.msg
exited with code 253
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