joshmoore

from fileinput import input
import requests

# cat image ids to this script to loop over annotations
# e.g.: cut -f2 image_ids.tsv | python get_idr_annotations.py

def connect():
    import omero
    from omero.gateway import BlitzGateway
    from omero.sys import ParametersI

joshmoore

#!/bin/bash

set -e
set -u

FILE=$1
shift;

# Define environement variables
HOST=${HOST:-localhost}

joshmoore

#!/usr/bin/env python
# -*- coding: utf-8 -*-

#
# Copyright (C) 2014 Glencoe Software, Inc.
# All rights reserved.

import time
import tempfile
import os

joshmoore

from omero.gateway import BlitzGateway
import omero
from omero.rtypes import rstring
from omero_model_ProjectI import ProjectI
from omero_model_DatasetI import DatasetI
from omero_model_ProjectDatasetLinkI import ProjectDatasetLinkI
from omero_model_ExperimenterI import ExperimenterI
from omero_model_ExperimenterGroupI import ExperimenterGroupI
from omero_model_PermissionsI import PermissionsI
from omero_model_TagAnnotationI import TagAnnotationI

joshmoore

"""
This script searches for Images, using database queries queries generated
from a number of parameters.
"""

import omero.scripts as scripts
from omero.gateway import BlitzGateway
from omero.rtypes import *

from datetime import datetime

joshmoore

"""
This script searches for Images, using database queries queries generated
from a number of parameters.
"""

import omero.scripts as scripts
from omero.gateway import BlitzGateway
from omero.rtypes import *

from datetime import datetime

joshmoore

#!/usr/bin/env python
import traceback
import tempfile
import fcntl
import sys
import os

try:
    d, = sys.argv[1:]
except ValueError:

joshmoore

#!/bin/bash

(

set -e
set -u


export CLASSPATH=.:`echo lib/server/*.jar | sed 's/ /:/g'`
cat > ldap.xml <<EOF