joshmoore’s gists

joshmoore / lda.sh

Created November 30, 2012 14:28 — forked from dpwrussell/lda.sh

ldap experiment to determine how to query LDAP without basing with an OU

	#!/bin/bash

	(

	set -e
	set -u


	export CLASSPATH=.:`echo lib/server/*.jar \| sed 's/ /:/g'`
	cat > ldap.xml <<EOF

joshmoore / lock_files_in_directory.py

Last active December 14, 2015 16:58 — forked from chris-allan/lock_files_in_directory.py

joshmoore / Metadata_Search.py

Created August 23, 2013 13:38 — forked from will-moore/Metadata_Search.py

	"""
	This script searches for Images, using database queries queries generated
	from a number of parameters.
	"""

	import omero.scripts as scripts
	from omero.gateway import BlitzGateway
	from omero.rtypes import *

	from datetime import datetime

joshmoore / Metadata_Search.py

Created August 23, 2013 13:50 — forked from will-moore/Metadata_Search.py

	"""
	This script searches for Images, using database queries queries generated
	from a number of parameters.
	"""

	import omero.scripts as scripts
	from omero.gateway import BlitzGateway
	from omero.rtypes import *

	from datetime import datetime

joshmoore / makeUsers.py

Last active December 27, 2015 22:59 — forked from ximenesuk/makeUsers.py

	from omero.gateway import BlitzGateway
	import omero
	from omero.rtypes import rstring
	from omero_model_ProjectI import ProjectI
	from omero_model_DatasetI import DatasetI
	from omero_model_ProjectDatasetLinkI import ProjectDatasetLinkI
	from omero_model_ExperimenterI import ExperimenterI
	from omero_model_ExperimenterGroupI import ExperimenterGroupI
	from omero_model_PermissionsI import PermissionsI
	from omero_model_TagAnnotationI import TagAnnotationI

joshmoore / corrupt_search.py

Last active August 29, 2015 14:04 — forked from jballanc/corrupt_search.py

	#!/usr/bin/env python
	# -- coding: utf-8 --

	#
	# Copyright (C) 2014 Glencoe Software, Inc.
	# All rights reserved.

	import time
	import tempfile
	import os

joshmoore / format-import

Last active August 29, 2015 14:08 — forked from sbesson/format-import

	#!/bin/bash

	set -e
	set -u

	FILE=$1
	shift;

	# Define environement variables
	HOST=${HOST:-localhost}

joshmoore / get_idr_annotations.py

Created May 1, 2018 08:54 — forked from rgozim/get_idr_annotations.py

	from fileinput import input
	import requests

	# cat image ids to this script to loop over annotations
	# e.g.: cut -f2 image_ids.tsv \| python get_idr_annotations.py

	def connect():
	import omero
	from omero.gateway import BlitzGateway
	from omero.sys import ParametersI

Josh Moore joshmoore