uw2 docker dev with petsc-3.7.6

Dockerfile

# get the development version
FROM underworldcode/underworld2_untested:dev

MAINTAINER [email protected]

# modify original underworldcode/underworld2 images
RUN apt-get update -qq && DEBIAN_FRONTEND=noninteractive \
  apt-get remove petsc-dev -yq && \
  apt-get autoremove -yq && \
  apt-get install -yq \
  wget libmumps-dev liblapack-dev gfortran

# download petsc-lite-3.7.6
ENV PETSC_DIR /apps/petsc
RUN mkdir -p $PETSC_DIR
WORKDIR $PETSC_DIR
RUN wget -qO - http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.7.6.tar.gz | tar zxv

# install petsc-lite-3.7.6
ENV PETSC_PREFIX=/usr/local/petsc-3.7.6
ENV PETSC_DIR $PETSC_DIR/petsc-3.7.6
WORKDIR $PETSC_DIR
RUN ./configure --prefix=$PETSC_PREFIX --with-scalapack-lib=-lscalapack-openmpi \
  --download-hdf5=yes --download-mpi4py=yes --with-shared-libraries --with-pic=1 \
  --useThreads=0 --with-debugging=0 --with-mumps=1 && \
  make all && make install && chmod +rx $PETSC_DIR

ENV PETSC_DIR $PETSC_PREFIX
ENV HDF5_DIR $PETSC_DIR
ENV PYTHONPATH $PETSC_DIR/libs:$PYTHONPATH

# Reuse the existing underworld repository and reconfigure and compile
WORKDIR /root/underworld2/libUnderworld

# get underworld, compile, delete some unnecessary files, trust notebooks, copy to workspace
RUN ./configure.py --with-debugging=0  && \
    ./compile.py                 && \
    rm .sconsign.dblite          && \
    rm -fr .sconf_temp           && \
    cd build                     && \
    rm -fr libUnderworldPy       && \
    rm -fr StGermain             && \
    rm -fr gLucifer              && \
    rm -fr Underworld            && \
    rm -fr StgFEM                && \
    rm -fr StgDomain             && \
    rm -fr PICellerator          && \
    rm -fr Solvers

# expose notebook port
EXPOSE 8888
# expose glucifer port
EXPOSE 9999

# setup space for working in
VOLUME /workspace/user_data
WORKDIR /workspace

# launch notebook
CMD ["jupyter", "notebook", " --no-browser"]