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``` | |
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh | |
chmod +x Miniconda3-latest-Linux-x86_64.sh | |
./Miniconda3-latest-Linux-x86_64.sh | |
#<Might have to write Yes and press enter> | |
ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Linuxbrew/install/master/install)" | |
brew install zsh | |
echo 'export PATH="/home/users/srivaa11/.linuxbrew/bin:$PATH"' >>~/.bash_profile | |
echo 'export MANPATH="/home/users/srivaa11/.linuxbrew/share/man:$MANPATH:"' >>~/.bash_profile | |
echo 'export INFOPATH="/home/users/srivaa11/.linuxbrew/share/info:$INFOPATH:"' >>~/.bash_profile | |
echo 'export SHELL="which zsh"' | |
echo '[ -z "$ZSH_VERSION" ] && exec "$SHELL" -l' | |
wget https://raw.githubusercontent.com/robbyrussell/oh-my-zsh/master/tools/install.sh | |
echo 'Comment out exit from line 30 in install.sh' | |
chmod +x install.sh | |
./install.sh | |
echo 'change theme to bira in .zshrc' | |
brew install tmux | |
echo 'unbind C-b' > .tmux.conf | |
echo 'set -g prefix C-s >> .tmux.conf | |
echo 'bind C-s send-prefix >> .tmux.conf | |
echo 'tmux attach-session -t ccs' > open.sh | |
echo 'tmux detach' > detach.sh | |
brew install cmake | |
brew install boost | |
conda create -n setup python=2.7 | |
conda create -n ccs --clone setup | |
source activate ccs | |
pip install cython | |
pip install pysam | |
conda install h5py | |
``` |
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