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kamidzi/first_sample.bcftools.stats.txt

Created April 15, 2024 03:46
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AllofUs test bcftools stats
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first_sample.bcftools.stats.txt
~/workspaces_playground/duplicateofdeliriumtremensresearch/dataset_78200286_vcfs$ bcftools stats dataset_78200286_merged.first_half.vcf.gz
# This file was produced by bcftools stats (1.12+htslib-1.12) and can be plotted using plot-vcfstats.
# The command line was: bcftools stats dataset_78200286_merged.first_half.vcf.gz
#
# Definition of sets:
# ID [2]id [3]tab-separated file names
ID 0 dataset_78200286_merged.first_half.vcf.gz
# SN, Summary numbers:
# number of records .. number of data rows in the VCF
# number of no-ALTs .. reference-only sites, ALT is either "." or identical to REF
# number of SNPs .. number of rows with a SNP
# number of MNPs .. number of rows with a MNP, such as CC>TT
# number of indels .. number of rows with an indel
# number of others .. number of rows with other type, for example a symbolic allele or
# a complex substitution, such as ACT>TCGA
# number of multiallelic sites .. number of rows with multiple alternate alleles
# number of multiallelic SNP sites .. number of rows with multiple alternate alleles, all SNPs
#
# Note that rows containing multiple types will be counted multiple times, in each
# counter. For example, a row with a SNP and an indel increments both the SNP and
# the indel counter.
#
# SN [2]id [3]key [4]value
SN 0 number of samples: 260
SN 0 number of records: 21710241
SN 0 number of no-ALTs: 0
SN 0 number of SNPs: 18801325
SN 0 number of MNPs: 0
SN 0 number of indels: 3221233
SN 0 number of others: 0
SN 0 number of multiallelic sites: 1075692
SN 0 number of multiallelic SNP sites: 144479
# TSTV, transitions/transversions:
# TSTV [2]id [3]ts [4]tv [5]ts/tv [6]ts (1st ALT) [7]tv (1st ALT) [8]ts/tv (1st ALT)
TSTV 0 12491523 6470688 1.93 12354900 6271015 1.97
# SiS, Singleton stats:
# SiS [2]id [3]allele count [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable
SiS 0 1 6564583 4345514 2219069 1477821 0 0 1477821
# AF, Stats by non-reference allele frequency:
# AF [2]id [3]allele frequency [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable
AF 0 0.000000 9153349 5980619 3172730 2122066 0 0 2122066
AF 0 0.003846 1797291 1206930 590361 584803 0 0 584803
AF 0 0.007692 964951 646829 318122 354455 0 0 354455
AF 0 0.011538 635381 425147 210234 252015 0 0 252015
AF 0 0.015385 456003 305277 150726 193574 0 0 193574
AF 0 0.019231 342952 229141 113811 153608 0 0 153608
AF 0 0.023077 273023 182164 90859 126148 0 0 126148
AF 0 0.026923 226989 150946 76043 108070 0 0 108070
AF 0 0.030769 186218 123379 62839 91466 0 0 91466
AF 0 0.034615 161071 106547 54524 80013 0 0 80013
AF 0 0.038462 136919 90990 45929 70045 0 0 70045
AF 0 0.042308 122507 80975 41532 63172 0 0 63172
AF 0 0.046154 110561 72812 37749 57007 0 0 57007
AF 0 0.050000 99170 65812 33358 50272 0 0 50272
AF 0 0.053846 89975 59379 30596 47152 0 0 47152
AF 0 0.057692 84270 55640 28630 43445 0 0 43445
AF 0 0.061538 78051 51631 26420 40455 0 0 40455
AF 0 0.065385 72693 48048 24645 37635 0 0 37635
AF 0 0.069231 69091 45406 23685 34265 0 0 34265
AF 0 0.073077 65259 43026 22233 33103 0 0 33103
AF 0 0.076923 59404 39538 19866 29660 0 0 29660
AF 0 0.080769 57678 37573 20105 29447 0 0 29447
AF 0 0.084615 55023 36474 18549 26842 0 0 26842
AF 0 0.088462 53635 34960 18675 26408 0 0 26408
AF 0 0.092308 51327 33831 17496 24308 0 0 24308
AF 0 0.096154 50499 32959 17540 24722 0 0 24722
AF 0 0.100000 46089 30765 15324 21755 0 0 21755
AF 0 0.103846 45415 30058 15357 20842 0 0 20842
AF 0 0.107692 46895 30551 16344 21911 0 0 21911
AF 0 0.111538 44547 29546 15001 19857 0 0 19857
AF 0 0.115385 41855 28037 13818 18557 0 0 18557
AF 0 0.119231 41700 27651 14049 18101 0 0 18101
AF 0 0.123077 43214 28086 15128 19287 0 0 19287
AF 0 0.126923 39643 26401 13242 16933 0 0 16933
AF 0 0.130769 38599 25678 12921 16399 0 0 16399
AF 0 0.134615 37922 25191 12731 16275 0 0 16275
AF 0 0.138462 35299 23446 11853 14227 0 0 14227
AF 0 0.142308 37361 24004 13357 17152 0 0 17152
AF 0 0.146154 35563 23555 12008 14871 0 0 14871
AF 0 0.150000 33812 22387 11425 13832 0 0 13832
AF 0 0.153846 32576 21441 11135 13537 0 0 13537
AF 0 0.157692 32507 21528 10979 13144 0 0 13144
AF 0 0.161538 30740 20457 10283 12419 0 0 12419
AF 0 0.165385 35315 22608 12707 15464 0 0 15464
AF 0 0.169231 30518 20294 10224 12317 0 0 12317
AF 0 0.173077 29853 19700 10153 11825 0 0 11825
AF 0 0.176923 29066 19434 9632 11833 0 0 11833
AF 0 0.180769 29533 19399 10134 12026 0 0 12026
AF 0 0.184615 29159 19358 9801 11567 0 0 11567
AF 0 0.188462 27872 18284 9588 11155 0 0 11155
AF 0 0.192308 27393 18313 9080 10488 0 0 10488
AF 0 0.196154 31657 20076 11581 13087 0 0 13087
AF 0 0.200000 26716 17719 8997 10038 0 0 10038
AF 0 0.203846 25955 17193 8762 10438 0 0 10438
AF 0 0.207692 25343 16938 8405 9608 0 0 9608
AF 0 0.211538 25883 17322 8561 10105 0 0 10105
AF 0 0.215385 25291 16725 8566 9555 0 0 9555
AF 0 0.219231 25016 16463 8553 9697 0 0 9697
AF 0 0.223077 24610 16444 8166 9383 0 0 9383
AF 0 0.226923 23802 15663 8139 9091 0 0 9091
AF 0 0.230769 24231 16164 8067 8657 0 0 8657
AF 0 0.234615 23497 15633 7864 8590 0 0 8590
AF 0 0.238462 23191 15431 7760 8318 0 0 8318
AF 0 0.242308 23202 15464 7738 8107 0 0 8107
AF 0 0.246154 28266 17397 10869 12581 0 0 12581
AF 0 0.250000 22361 14830 7531 7626 0 0 7626
AF 0 0.253846 22009 14674 7335 7708 0 0 7708
AF 0 0.257692 21450 14344 7106 7801 0 0 7801
AF 0 0.261538 21667 14283 7384 7785 0 0 7785
AF 0 0.265385 21352 14180 7172 7640 0 0 7640
AF 0 0.269231 21143 14036 7107 7733 0 0 7733
AF 0 0.273077 20695 13672 7023 7770 0 0 7770
AF 0 0.276923 20734 13787 6947 7228 0 0 7228
AF 0 0.280769 19125 12761 6364 6696 0 0 6696
AF 0 0.284615 20387 13335 7052 8031 0 0 8031
AF 0 0.288462 19539 12874 6665 6930 0 0 6930
AF 0 0.292308 19762 13090 6672 6858 0 0 6858
AF 0 0.296154 20735 13538 7197 7656 0 0 7656
AF 0 0.300000 19485 12996 6489 6639 0 0 6639
AF 0 0.303846 19251 12888 6363 6686 0 0 6686
AF 0 0.307692 19105 12560 6545 6849 0 0 6849
AF 0 0.311538 18325 12176 6149 6133 0 0 6133
AF 0 0.315385 18319 12209 6110 6265 0 0 6265
AF 0 0.319231 18059 11975 6084 6155 0 0 6155
AF 0 0.323077 17332 11422 5910 5975 0 0 5975
AF 0 0.326923 17144 11408 5736 5862 0 0 5862
AF 0 0.330769 24391 14508 9883 10171 0 0 10171
AF 0 0.334615 17014 11324 5690 5624 0 0 5624
AF 0 0.338462 16392 10941 5451 5568 0 0 5568
AF 0 0.342308 16265 10833 5432 5552 0 0 5552
AF 0 0.346154 17366 11385 5981 5791 0 0 5791
AF 0 0.350000 16384 10781 5603 5526 0 0 5526
AF 0 0.353846 16935 11144 5791 5886 0 0 5886
AF 0 0.357692 16028 10691 5337 5369 0 0 5369
AF 0 0.361538 16162 10762 5400 5484 0 0 5484
AF 0 0.365385 15690 10442 5248 5243 0 0 5243
AF 0 0.369231 15878 10433 5445 5150 0 0 5150
AF 0 0.373077 16704 10849 5855 6595 0 0 6595
AF 0 0.376923 15745 10474 5271 5095 0 0 5095
AF 0 0.380769 15551 10307 5244 5153 0 0 5153
AF 0 0.384615 15880 10609 5271 5180 0 0 5180
AF 0 0.388462 15125 10055 5070 4979 0 0 4979
AF 0 0.392308 15300 10061 5239 4798 0 0 4798
AF 0 0.396154 15949 10353 5596 5707 0 0 5707
AF 0 0.400000 14951 9719 5232 4632 0 0 4632
AF 0 0.403846 14975 9954 5021 4878 0 0 4878
AF 0 0.407692 14879 9843 5036 4606 0 0 4606
AF 0 0.411538 14886 9803 5083 5003 0 0 5003
AF 0 0.415385 14410 9529 4881 4503 0 0 4503
AF 0 0.419231 14541 9614 4927 4574 0 0 4574
AF 0 0.423077 13619 9020 4599 4225 0 0 4225
AF 0 0.426923 14858 9714 5144 4973 0 0 4973
AF 0 0.430769 14326 9460 4866 4421 0 0 4421
AF 0 0.434615 14101 9368 4733 4554 0 0 4554
AF 0 0.438462 13711 9102 4609 4174 0 0 4174
AF 0 0.442308 13943 9202 4741 4331 0 0 4331
AF 0 0.446154 13704 9014 4690 4345 0 0 4345
AF 0 0.450000 13743 9099 4644 4188 0 0 4188
AF 0 0.453846 14090 9303 4787 4232 0 0 4232
AF 0 0.457692 13970 9181 4789 4258 0 0 4258
AF 0 0.461538 13757 9066 4691 4162 0 0 4162
AF 0 0.465385 13696 9053 4643 4061 0 0 4061
AF 0 0.469231 13193 8689 4504 3939 0 0 3939
AF 0 0.473077 14065 9304 4761 4105 0 0 4105
AF 0 0.476923 13640 8895 4745 3892 0 0 3892
AF 0 0.480769 13766 9077 4689 3842 0 0 3842
AF 0 0.484615 14060 9154 4906 3800 0 0 3800
AF 0 0.488462 14332 9430 4902 3785 0 0 3785
AF 0 0.492308 14627 9338 5289 3663 0 0 3663
AF 0 0.496154 51221 29090 22131 16679 0 0 16679
AF 0 0.500000 13746 9076 4670 3547 0 0 3547
AF 0 0.503846 12801 8411 4390 3485 0 0 3485
AF 0 0.507692 12485 8238 4247 3461 0 0 3461
AF 0 0.511538 12627 8321 4306 3504 0 0 3504
AF 0 0.515385 11868 7839 4029 3377 0 0 3377
AF 0 0.519231 11981 7932 4049 3373 0 0 3373
AF 0 0.523077 11649 7678 3971 3237 0 0 3237
AF 0 0.526923 11322 7504 3818 3317 0 0 3317
AF 0 0.530769 11338 7405 3933 3261 0 0 3261
AF 0 0.534615 11654 7711 3943 3246 0 0 3246
AF 0 0.538462 11037 7282 3755 3251 0 0 3251
AF 0 0.542308 10695 7168 3527 3114 0 0 3114
AF 0 0.546154 10709 7097 3612 3136 0 0 3136
AF 0 0.550000 10952 7295 3657 3185 0 0 3185
AF 0 0.553846 11121 7374 3747 2982 0 0 2982
AF 0 0.557692 11096 7344 3752 3145 0 0 3145
AF 0 0.561538 10499 6994 3505 2754 0 0 2754
AF 0 0.565385 10257 6840 3417 2817 0 0 2817
AF 0 0.569231 10650 7089 3561 3122 0 0 3122
AF 0 0.573077 10070 6732 3338 2699 0 0 2699
AF 0 0.576923 10016 6709 3307 2624 0 0 2624
AF 0 0.580769 10115 6669 3446 2995 0 0 2995
AF 0 0.584615 9756 6527 3229 2610 0 0 2610
AF 0 0.588462 10192 6732 3460 2633 0 0 2633
AF 0 0.592308 9831 6515 3316 2503 0 0 2503
AF 0 0.596154 10393 6823 3570 2881 0 0 2881
AF 0 0.600000 9895 6599 3296 2578 0 0 2578
AF 0 0.603846 9509 6342 3167 2478 0 0 2478
AF 0 0.607692 9590 6278 3312 2582 0 0 2582
AF 0 0.611538 9785 6548 3237 2474 0 0 2474
AF 0 0.615385 9627 6393 3234 2360 0 0 2360
AF 0 0.619231 9844 6452 3392 2944 0 0 2944
AF 0 0.623077 8919 6018 2901 2216 0 0 2216
AF 0 0.626923 9062 6016 3046 2277 0 0 2277
AF 0 0.630769 9228 6100 3128 2288 0 0 2288
AF 0 0.634615 9079 6081 2998 2138 0 0 2138
AF 0 0.638462 9366 6206 3160 2392 0 0 2392
AF 0 0.642308 8612 5760 2852 2086 0 0 2086
AF 0 0.646154 9175 6057 3118 2208 0 0 2208
AF 0 0.650000 8565 5781 2784 2072 0 0 2072
AF 0 0.653846 8708 5777 2931 2110 0 0 2110
AF 0 0.657692 9162 6123 3039 2022 0 0 2022
AF 0 0.661538 10593 6834 3759 3129 0 0 3129
AF 0 0.665385 9046 5968 3078 1971 0 0 1971
AF 0 0.669231 8218 5498 2720 1916 0 0 1916
AF 0 0.673077 8494 5664 2830 1952 0 0 1952
AF 0 0.676923 8059 5324 2735 1918 0 0 1918
AF 0 0.680769 8175 5409 2766 1800 0 0 1800
AF 0 0.684615 8507 5711 2796 2023 0 0 2023
AF 0 0.688462 8641 5773 2868 1873 0 0 1873
AF 0 0.692308 7635 5090 2545 1844 0 0 1844
AF 0 0.696154 8392 5523 2869 2105 0 0 2105
AF 0 0.700000 8121 5464 2657 1744 0 0 1744
AF 0 0.703846 7775 5222 2553 1827 0 0 1827
AF 0 0.707692 7644 5137 2507 1693 0 0 1693
AF 0 0.711538 7801 5169 2632 1915 0 0 1915
AF 0 0.715385 7551 5092 2459 1681 0 0 1681
AF 0 0.719231 7501 5020 2481 1658 0 0 1658
AF 0 0.723077 8388 5672 2716 1631 0 0 1631
AF 0 0.726923 7372 4975 2397 1617 0 0 1617
AF 0 0.730769 8015 5321 2694 1589 0 0 1589
AF 0 0.734615 7807 5152 2655 1625 0 0 1625
AF 0 0.738462 7459 5034 2425 1598 0 0 1598
AF 0 0.742308 7638 5003 2635 1456 0 0 1456
AF 0 0.746154 10362 6459 3903 2845 0 0 2845
AF 0 0.750000 7158 4797 2361 1424 0 0 1424
AF 0 0.753846 7298 4836 2462 1508 0 0 1508
AF 0 0.757692 7730 5143 2587 1535 0 0 1535
AF 0 0.761538 7489 5003 2486 1468 0 0 1468
AF 0 0.765385 7335 4862 2473 1453 0 0 1453
AF 0 0.769231 6751 4461 2290 1365 0 0 1365
AF 0 0.773077 6925 4585 2340 1400 0 0 1400
AF 0 0.776923 7689 5087 2602 1404 0 0 1404
AF 0 0.780769 7232 4811 2421 1437 0 0 1437
AF 0 0.784615 6555 4394 2161 1280 0 0 1280
AF 0 0.788462 7054 4710 2344 1331 0 0 1331
AF 0 0.792308 6867 4604 2263 1313 0 0 1313
AF 0 0.796154 7055 4559 2496 1479 0 0 1479
AF 0 0.800000 6851 4615 2236 1215 0 0 1215
AF 0 0.803846 6872 4571 2301 1288 0 0 1288
AF 0 0.807692 6661 4448 2213 1215 0 0 1215
AF 0 0.811538 7043 4638 2405 1281 0 0 1281
AF 0 0.815385 6727 4466 2261 1223 0 0 1223
AF 0 0.819231 6618 4491 2127 1165 0 0 1165
AF 0 0.823077 6426 4318 2108 1161 0 0 1161
AF 0 0.826923 7762 5041 2721 1583 0 0 1583
AF 0 0.830769 6371 4300 2071 1092 0 0 1092
AF 0 0.834615 6692 4415 2277 1190 0 0 1190
AF 0 0.838462 6675 4453 2222 1099 0 0 1099
AF 0 0.842308 6577 4446 2131 1121 0 0 1121
AF 0 0.846154 6755 4534 2221 1165 0 0 1165
AF 0 0.850000 6480 4303 2177 1077 0 0 1077
AF 0 0.853846 6163 4137 2026 1125 0 0 1125
AF 0 0.857692 6206 4145 2061 1064 0 0 1064
AF 0 0.861538 6246 4181 2065 1032 0 0 1032
AF 0 0.865385 6507 4306 2201 1038 0 0 1038
AF 0 0.869231 6562 4279 2283 1286 0 0 1286
AF 0 0.873077 5993 4000 1993 997 0 0 997
AF 0 0.876923 6010 4048 1962 1047 0 0 1047
AF 0 0.880769 5808 3970 1838 972 0 0 972
AF 0 0.884615 5785 3847 1938 954 0 0 954
AF 0 0.888462 5905 3945 1960 963 0 0 963
AF 0 0.892308 6045 4000 2045 946 0 0 946
AF 0 0.896154 6189 4035 2154 996 0 0 996
AF 0 0.900000 5805 3868 1937 898 0 0 898
AF 0 0.903846 5946 3959 1987 931 0 0 931
AF 0 0.907692 6217 4158 2059 961 0 0 961
AF 0 0.911538 6487 4305 2182 1058 0 0 1058
AF 0 0.915385 5325 3549 1776 814 0 0 814
AF 0 0.919231 5602 3768 1834 859 0 0 859
AF 0 0.923077 5904 3928 1976 934 0 0 934
AF 0 0.926923 5700 3850 1850 841 0 0 841
AF 0 0.930769 5606 3744 1862 892 0 0 892
AF 0 0.934615 5704 3809 1895 842 0 0 842
AF 0 0.938462 5533 3667 1866 952 0 0 952
AF 0 0.942308 5828 3959 1869 809 0 0 809
AF 0 0.946154 5983 3977 2006 949 0 0 949
AF 0 0.950000 5998 4013 1985 838 0 0 838
AF 0 0.953846 6138 4138 2000 866 0 0 866
AF 0 0.957692 6266 4211 2055 904 0 0 904
AF 0 0.961538 6894 4684 2210 996 0 0 996
AF 0 0.965385 7362 4896 2466 1089 0 0 1089
AF 0 0.969231 7900 5363 2537 1045 0 0 1045
AF 0 0.973077 8006 5456 2550 988 0 0 988
AF 0 0.976923 9246 6274 2972 1125 0 0 1125
AF 0 0.980769 10318 6986 3332 1152 0 0 1152
AF 0 0.984615 10767 7345 3422 1249 0 0 1249
AF 0 0.988462 11609 7948 3661 1356 0 0 1356
AF 0 0.992308 13425 9044 4381 1509 0 0 1509
AF 0 0.996154 61197 29642 31555 14856 0 0 14856
# QUAL, Stats by quality
# QUAL [2]id [3]Quality [4]number of SNPs [5]number of transitions (1st ALT) [6]number of transversions (1st ALT) [7]number of indels
QUAL 0 . 18625915 12354900 6271015 3221233
# IDD, InDel distribution:
# IDD [2]id [3]length (deletions negative) [4]number of sites [5]number of genotypes [6]mean VAF
IDD 0 -60 26065 0 .
IDD 0 -59 539 0 .
IDD 0 -58 849 0 .
IDD 0 -57 551 0 .
IDD 0 -56 1039 0 .
IDD 0 -55 597 0 .
IDD 0 -54 1118 0 .
IDD 0 -53 684 0 .
IDD 0 -52 1220 0 .
IDD 0 -51 776 0 .
IDD 0 -50 1463 0 .
IDD 0 -49 1528 0 .
IDD 0 -48 1789 0 .
IDD 0 -47 920 0 .
IDD 0 -46 1468 0 .
IDD 0 -45 1174 0 .
IDD 0 -44 2005 0 .
IDD 0 -43 1096 0 .
IDD 0 -42 2164 0 .
IDD 0 -41 1298 0 .
IDD 0 -40 3678 0 .
IDD 0 -39 1600 0 .
IDD 0 -38 2695 0 .
IDD 0 -37 1736 0 .
IDD 0 -36 4304 0 .
IDD 0 -35 2219 0 .
IDD 0 -34 3793 0 .
IDD 0 -33 2371 0 .
IDD 0 -32 6207 0 .
IDD 0 -31 2744 0 .
IDD 0 -30 6821 0 .
IDD 0 -29 3405 0 .
IDD 0 -28 9456 0 .
IDD 0 -27 4406 0 .
IDD 0 -26 9038 0 .
IDD 0 -25 5840 0 .
IDD 0 -24 15107 0 .
IDD 0 -23 6268 0 .
IDD 0 -22 12978 0 .
IDD 0 -21 7854 0 .
IDD 0 -20 23922 0 .
IDD 0 -19 9487 0 .
IDD 0 -18 22450 0 .
IDD 0 -17 11997 0 .
IDD 0 -16 35444 0 .
IDD 0 -15 20138 0 .
IDD 0 -14 35031 0 .
IDD 0 -13 20974 0 .
IDD 0 -12 62403 0 .
IDD 0 -11 27633 0 .
IDD 0 -10 62512 0 .
IDD 0 -9 37986 0 .
IDD 0 -8 92947 0 .
IDD 0 -7 50394 0 .
IDD 0 -6 112817 0 .
IDD 0 -5 106650 0 .
IDD 0 -4 296330 0 .
IDD 0 -3 234862 0 .
IDD 0 -2 474790 0 .
IDD 0 -1 911891 0 .
IDD 0 1 895600 0 .
IDD 0 2 463648 0 .
IDD 0 3 191971 0 .
IDD 0 4 257631 0 .
IDD 0 5 96095 0 .
IDD 0 6 137756 0 .
IDD 0 7 54842 0 .
IDD 0 8 121101 0 .
IDD 0 9 45437 0 .
IDD 0 10 80842 0 .
IDD 0 11 32526 0 .
IDD 0 12 81497 0 .
IDD 0 13 26310 0 .
IDD 0 14 49985 0 .
IDD 0 15 28173 0 .
IDD 0 16 52678 0 .
IDD 0 17 18425 0 .
IDD 0 18 36377 0 .
IDD 0 19 16048 0 .
IDD 0 20 38640 0 .
IDD 0 21 14620 0 .
IDD 0 22 23771 0 .
IDD 0 23 11938 0 .
IDD 0 24 26695 0 .
IDD 0 25 11317 0 .
IDD 0 26 17531 0 .
IDD 0 27 9306 0 .
IDD 0 28 18157 0 .
IDD 0 29 7234 0 .
IDD 0 30 14217 0 .
IDD 0 31 6146 0 .
IDD 0 32 12464 0 .
IDD 0 33 5228 0 .
IDD 0 34 8590 0 .
IDD 0 35 5033 0 .
IDD 0 36 8784 0 .
IDD 0 37 3505 0 .
IDD 0 38 5591 0 .
IDD 0 39 3309 0 .
IDD 0 40 6507 0 .
IDD 0 41 2456 0 .
IDD 0 42 4279 0 .
IDD 0 43 2327 0 .
IDD 0 44 4089 0 .
IDD 0 45 2432 0 .
IDD 0 46 3122 0 .
IDD 0 47 1873 0 .
IDD 0 48 3627 0 .
IDD 0 49 2107 0 .
IDD 0 50 2767 0 .
IDD 0 51 1688 0 .
IDD 0 52 2782 0 .
IDD 0 53 1376 0 .
IDD 0 54 2344 0 .
IDD 0 55 1445 0 .
IDD 0 56 2308 0 .
IDD 0 57 1318 0 .
IDD 0 58 1835 0 .
IDD 0 59 1373 0 .
IDD 0 60 47612 0 .
# ST, Substitution types:
# ST [2]id [3]type [4]count
ST 0 A>C 754677
ST 0 A>G 2652681
ST 0 A>T 730495
ST 0 C>A 919891
ST 0 C>G 831098
ST 0 C>T 3589509
ST 0 G>A 3590674
ST 0 G>C 834506
ST 0 G>T 906677
ST 0 T>A 736847
ST 0 T>C 2658659
ST 0 T>G 756497
# DP, Depth distribution
# DP [2]id [3]bin [4]number of genotypes [5]fraction of genotypes (%) [6]number of sites [7]fraction of sites(%)
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