Erik Kastman kastman

Install Survana for Exporting Responses

Install Homebrew
ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
Install node.js:
Note: The only current supported version is node 0.8 (0.10 breaks with some charset error).

Prerequisites

Install Homebrew
ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
Install node.js:
Note: The only current supported version is node 0.8 (0.10 breaks with some charset error).
brew install nvm
Note: Homebrew requires some setup for node, including mkdir ~/.nvm and adding NVM_DIR and sourcing nvm.sh to the .bash_profile. Follow the instructions under "==> Caveats" if you see them.

	$ ./.circleci/run_docker_build.sh
	No active host found
	bash: cannot set terminal process group (-1): Inappropriate ioctl for device
	bash: no job control in this shell
	useradd: warning: the home directory already exists.
	Not copying any file from skel directory into it.
	+ cp -r /home/conda/staged-recipes/recipes /home/conda/conda-recipes
	+ cp -r /home/conda/staged-recipes/.ci_support /home/conda/.ci_support
	+ echo 'Finding recipes merged in master and removing them from the build.'
	Finding recipes merged in master and removing them from the build.

	$ circleci build

	====>> Spin up Environment
	Build-agent version 0.0.4710-44beb0a (2018-02-27T20:05:34+0000)
	Starting container bioconda/bioconda-utils-build-env
	using image bioconda/bioconda-utils-build-env@sha256:1754002c070d602a3f80d4cb029129081d88487c97026a279b873b003d48bdb8

	Using build environment variables:
	BASH_ENV=/tmp/.bash_env-localbuild-1520100701
	CI=true

	#!/usr/bin/env python2
	# -- coding: utf-8 --
	"""
	This experiment was created using PsychoPy2 Experiment Builder (v1.81.03), Mon Mar 16 17:19:06 2015
	If you publish work using this script please cite the relevant PsychoPy publications
	Peirce, JW (2007) PsychoPy - Psychophysics software in Python. Journal of Neuroscience Methods, 162(1-2), 8-13.
	Peirce, JW (2009) Generating stimuli for neuroscience using PsychoPy. Frontiers in Neuroinformatics, 2:10. doi: 10.3389/neuro.11.010.2008
	"""

	from __future__ import division # so that 1/3=0.333 instead of 1/3=0

	def _build_betacourse_regressors(self, timings, condition_code, durations_list=[]):
	onsets=[];durations=[];conditions=[]
	print timings.size, len(durations_list)
	for i in range(timings.size):
	onset = [timings[i]]
	duration = [durations_list[i]] if len(durations_list) else [2]
	name = "%s_%d" % (condition_code, i + 1)
	onsets.append(onset)
	durations.append(duration)
	conditions.append(name)

	#!/usr/bin/env bash

	load_freesurfer 5.3.0-centos4
	export SUBJECTS_DIR=/ncf/jwb/studies/FallyMGH/Analyses/fsrecon_v1
	export L1SINK=/ncf/jwb/studies/FallyMGH/Analyses/fmriNipype_v1/data/level1sink/

	batch1=(FAL001 FAL002 FAL004 FAL009 FAL009 FAL010)
	batch2=(FAL010 FAL013 FAL014 FAL020 FAL021 FAL024 FAL025 FAL026 FAL029)

	for subj in "${batch2[@]}"; do

	An ArgumentError occurred in contacts#new:

	invalid %-encoding (arizona10U
	scottsdale1%0#U
	starfield technologies, inc.1301U*http://certs.starfieldtech.com/repository/1402U+starfield secure certificate authority - g2- g3l-)
	vendor/ruby-1.9.2/lib/ruby/1.9.1/uri/common.rb:765:in `decode_www_form_component'


	-------------------------------
	Request:

	<div class="row">
	<div class="col-md-12">
	<div class="page-header">
	<h1>Contact Us</h1>
	</div>
	<p>We can help you answer questions and solve problems. Fill out the following form and we'll be in touch shortly:</p>
	</div>
	<div class="row">
	<div class="col-md-12 well">
	<div class="col-md-3 col-md-offset-1" id='contact-form'>

	#!/usr/bin/env python
	from nipype.interfaces.base import BaseInterface, BaseInterfaceInputSpec, TraitedSpec, traits, InputMultiPath, OutputMultiPath, File
	from nipype.utils.filemanip import split_filename

	import niftiqa
	import os, sys

	####### Begin Class niftiqa ########
	class niftiqaInputSpec(BaseInterfaceInputSpec):
	niftis = InputMultiPath(traits.Either(traits.List(File(exists=True)),File(exists=True)),