kastman

$ ls data/
_2012_Feb_29_1520.log			_2012_Feb_29_1520inner_trials.psydat
_2012_Feb_29_1520.xlsx			_2012_Feb_29_1520trials.psydat

# Notice only one inner_trials psydat.

kastman

#!/usr/bin/env python
from nipype.interfaces.base import BaseInterface, BaseInterfaceInputSpec, TraitedSpec, traits, InputMultiPath, OutputMultiPath, File
from nipype.utils.filemanip import split_filename

import niftiqa
import os, sys

####### Begin Class niftiqa ########
class niftiqaInputSpec(BaseInterfaceInputSpec):
    niftis = InputMultiPath(traits.Either(traits.List(File(exists=True)),File(exists=True)),

kastman

<div class="row">
    <div class="col-md-12">
        <div class="page-header">
            <h1>Contact Us</h1>
        </div>
        <p>We can help you answer questions and solve problems. Fill out the following form and we'll be in touch shortly:</p>
    </div>
    <div class="row">
        <div class="col-md-12 well">
            <div class="col-md-3 col-md-offset-1" id='contact-form'>

kastman

Install Instructions

Prerequisites

• Install Homebrew
• ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
• Install node.js:
• Note: The only current supported version is node 0.8 (0.10 breaks with some charset error).
• brew install nvm
• Note: Homebrew requires some setup for node, including mkdir ~/.nvm and adding NVM_DIR and sourcing nvm.sh to the .bash_profile. Follow the instructions under "==> Caveats" if you see them.

kastman

An ArgumentError occurred in contacts#new:

 invalid %-encoding (arizona10U
scottsdale1%0#U
starfield technologies, inc.1301U*http://certs.starfieldtech.com/repository/1402U+starfield secure certificate authority - g2- g3l-)
 vendor/ruby-1.9.2/lib/ruby/1.9.1/uri/common.rb:765:in `decode_www_form_component'


-------------------------------
Request:

kastman

#!/usr/bin/env bash

load_freesurfer 5.3.0-centos4
export SUBJECTS_DIR=/ncf/jwb/studies/FallyMGH/Analyses/fsrecon_v1
export L1SINK=/ncf/jwb/studies/FallyMGH/Analyses/fmriNipype_v1/data/level1sink/

batch1=(FAL001 FAL002 FAL004 FAL009 FAL009 FAL010)
batch2=(FAL010 FAL013 FAL014 FAL020 FAL021 FAL024 FAL025 FAL026 FAL029)

for subj in "${batch2[@]}"; do

kastman

Install Survana for Exporting Responses

Prerequisites

• Install Homebrew
• ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
• Install node.js:
• Note: The only current supported version is node 0.8 (0.10 breaks with some charset error).

kastman

    def _build_betacourse_regressors(self, timings, condition_code, durations_list=[]):
        onsets=[];durations=[];conditions=[]
        print timings.size, len(durations_list)
        for i in range(timings.size):
            onset    = [timings[i]]
            duration = [durations_list[i]] if len(durations_list) else [2]
            name     = "%s_%d" % (condition_code, i + 1)
            onsets.append(onset)
            durations.append(duration)
            conditions.append(name)

kastman

#!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
This experiment was created using PsychoPy2 Experiment Builder (v1.81.03), Mon Mar 16 17:19:06 2015
If you publish work using this script please cite the relevant PsychoPy publications
  Peirce, JW (2007) PsychoPy - Psychophysics software in Python. Journal of Neuroscience Methods, 162(1-2), 8-13.
  Peirce, JW (2009) Generating stimuli for neuroscience using PsychoPy. Frontiers in Neuroinformatics, 2:10. doi: 10.3389/neuro.11.010.2008
"""

from __future__ import division  # so that 1/3=0.333 instead of 1/3=0

kastman

$ circleci build 

====>> Spin up Environment
Build-agent version 0.0.4710-44beb0a (2018-02-27T20:05:34+0000)
Starting container bioconda/bioconda-utils-build-env
  using image bioconda/bioconda-utils-build-env@sha256:1754002c070d602a3f80d4cb029129081d88487c97026a279b873b003d48bdb8

Using build environment variables:
  BASH_ENV=/tmp/.bash_env-localbuild-1520100701
  CI=true