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keiono/gal.json

Created April 29, 2014 23:19
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gal.json
{
"format_version" : "1.0",
"generated_by" : "cytoscape-3.1.0",
"target_cytoscapejs_version" : "~2.1",
"data" : {
"selected" : true,
"__Annotations" : [ "" ],
"shared_name" : "galFiltered.sif(1)",
"SUID" : 765,
"name" : "galFiltered.sif(1)"
},
"elements" : {
"nodes" : [ {
"data" : {
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"biological_process" : [ "biological_process" ],
"Synonym" : [ "S000004995", "YNL050C" ],
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"gal1RGexp" : 0.301,
"Assigned_by" : "SGD",
"IsSingleNode" : false,
"gal80Rsig" : 7.5124E-4,
"Date" : "20030422",
"TopologicalCoefficient" : 0.0,
"BetweennessCentrality" : 0.0,
"Radiality" : 0.58781362,
"DB_Object_ID" : "",
"molecular_function_DB_Reference" : [ "SGD_REF:S000069584" ],
"gal80Rexp" : 0.594,
"cellular_component_DB_Reference" : [ "SGD_REF:S000069584" ],
"NeighborhoodConnectivity" : 7.0,
"DB_Object_Name" : "Putative protein of unknown function",
"molecular_function_Evidence_Code" : [ "ND" ],
"cellular_component" : [ "cellular_component" ],
"Stress" : 0,
"SelfLoops" : 0,
"DB_Object_Synonym" : [ "" ],
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"gal4RGexp" : -0.448,
"Taxon" : "Saccharomyces cerevisiae",
"Annotation_Extension" : [ "" ],
"Gene_Product_Form_ID" : "",
"molecular_function" : [ "molecular_function" ],
"gal1RGsig" : 1.425E-5,
"selected" : false,
"DB_Object_Symbol" : "",
"name" : "YNL050C",
"shared_name" : "YNL050C",
"biological_process_Evidence_Code" : [ "ND" ],
"NumberOfUndirectedEdges" : 0,
"mapping_key" : "S000004995",
"NumberOfDirectedEdges" : 1,
"Qualifier" : [ "" ],
"With_or_From" : [ "" ],
"DB" : "SGD",
"DB_Object_Type" : "gene",
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"PartnerOfMultiEdgedNodePairs" : 0,
"biological_process_DB_Reference" : [ "SGD_REF:S000069584" ],
"gal4RGsig" : 0.0031926,
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"ClosenessCentrality" : 0.08244681,
"AverageShortestPathLength" : 12.12903226,
"ClusteringCoefficient" : 0.0
},
"position" : {
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"selected" : false
}, {
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"IsSingleNode" : false,
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"Date" : "20040322",
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"gal80Rexp" : 0.275,
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"DB_Object_Name" : "Non-essential conserved protein with a role in mRNA decapping",
"molecular_function_Evidence_Code" : [ "ND" ],
"cellular_component" : [ "cytoplasm", "cytoplasmic mRNA processing body" ],
"Stress" : 9804,
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"COMMON" : "YEL015W",
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"gal4RGexp" : -0.171,
"Taxon" : "Saccharomyces cerevisiae",
"Annotation_Extension" : [ "" ],
"Gene_Product_Form_ID" : "",
"molecular_function" : [ "molecular_function" ],
"gal1RGsig" : 3.0657E-5,
"selected" : false,
"DB_Object_Symbol" : "",
"name" : "YEL015W",
"shared_name" : "YEL015W",
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"NumberOfUndirectedEdges" : 0,
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"biological_process" : [ "rRNA processing", "mRNA processing", "tRNA processing", "RNA splicing", "mRNA splicing, via spliceosome" ],
"Synonym" : [ "S000003783", "LSM8", "YJR022W" ],
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"Assigned_by" : "UniProt",
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"Date" : "20130720",
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"cellular_component" : [ "nucleus", "U4/U6 x U5 tri-snRNP complex", "spliceosomal complex", "cytoplasm", "ribonucleoprotein complex", "nucleolus", "U6 snRNP" ],
"Stress" : 47386,
"SelfLoops" : 0,
"DB_Object_Synonym" : [ "" ],
"COMMON" : "LSM8",
"cellular_component_Evidence_Code" : [ "IEA", "IDA", "TAS" ],
"gal4RGexp" : -0.435,
"Taxon" : "Saccharomyces cerevisiae",
"Annotation_Extension" : [ "" ],
"Gene_Product_Form_ID" : "",
"molecular_function" : [ "RNA binding" ],
"gal1RGsig" : 0.6011,
"selected" : false,
"DB_Object_Symbol" : "",
"name" : "YJR022W",
"shared_name" : "YJR022W",
"biological_process_Evidence_Code" : [ "IEA", "IPI" ],
"NumberOfUndirectedEdges" : 0,
"mapping_key" : "S000003783",
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"Qualifier" : [ "", "contributes_to" ],
"With_or_From" : [ "UniProtKB-KW:KW-0539", "", "UniProtKB-KW:KW-0747", "UniProtKB-KW:KW-0963", "UniProtKB-SubCell:SL-0086", "UniProtKB-KW:KW-0698", "UniProtKB-KW:KW-0507", "UniProtKB-KW:KW-0819", "UniProtKB-KW:KW-0508", "UniProtKB-KW:KW-0687", "UniProtKB-SubCell:SL-0191" ],
"DB" : "SGD",
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"data" : {
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"Taxon" : "Saccharomyces cerevisiae",
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"Gene_Product_Form_ID" : "",
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"name" : "YNR050C",
"shared_name" : "YNR050C",
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"Stress" : 2,
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"COMMON" : "LSM4",
"cellular_component_Evidence_Code" : [ "IEA", "TAS", "IDA", "IPI" ],
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"Taxon" : "Saccharomyces cerevisiae",
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"molecular_function" : [ "RNA binding", "U6 snRNA binding" ],
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"name" : "YER112W",
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"Taxon" : "Saccharomyces cerevisiae",
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"molecular_function" : [ "RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription", "RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription", "histone deacetylase binding" ],
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"name" : "YBR112C",
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"Assigned_by" : "SGD",
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