Created
December 11, 2013 22:23
-
-
Save keiono/7919559 to your computer and use it in GitHub Desktop.
Sample script for Python: Generating complete graph
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# | |
# Python Script to generate complete graph | |
# | |
NUM_NODES = 20 | |
print "Creating complete graph with " + str(NUM_NODES) + " nodes..." | |
new_network = cyAppAdapter.getCyNetworkFactory().createNetwork() | |
new_network.getRow(new_network).set("name", "Complete Graph Created by Python Script") | |
cyAppAdapter.getCyNetworkManager().addNetwork(new_network); | |
# Add nodes | |
nodes = []; | |
for i in range (NUM_NODES): | |
node_name = "Node " + str(i) | |
node = new_network.addNode() | |
new_network.getRow(node).set("name", node_name) | |
nodes.append(node) | |
# Add edges | |
edge_count = 0; | |
for source in nodes: | |
for target in nodes: | |
if new_network.containsEdge(source, target) is False \ | |
and new_network.containsEdge(target, source) is False \ | |
and source is not target: | |
edge = new_network.addEdge(source, target, True) | |
edge_count = edge_count + 1 | |
new_network.getRow(edge).set("name", "Edge " + str(edge_count)) | |
new_network.getRow(edge).set("interaction", "interacts_with") |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment