Keiichiro Ono keiono
keiono
/ clixo-compact.json
Created
January 10, 2017 21:34
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| {"elements": {"edges": [{"data": {"source": "CLIXO:10545", "target": "CLIXO:10589"}}, {"data": {"source": "CLIXO:9735", "target": "CLIXO:10392"}}, {"data": {"source": "CLIXO:8651", "target": "CLIXO:10258"}}, {"data": {"source": "CLIXO:8591", "target": "CLIXO:8927"}}, {"data": {"source": "CLIXO:7808", "target": "CLIXO:10219"}}, {"data": {"source": "CLIXO:9327", "target": "CLIXO:9491"}}, {"data": {"source": "CLIXO:5913", "target": "CLIXO:10019"}}, {"data": {"source": "CLIXO:9433", "target": "CLIXO:10127"}}, {"data": {"source": "CLIXO:7146", "target": "CLIXO:8156"}}, {"data": {"source": "CLIXO:6952", "target": "CLIXO:9075"}}, {"data": {"source": "CLIXO:8750", "target": "CLIXO:10257"}}, {"data": {"source": "CLIXO:7472", "target": "CLIXO:10671"}}, {"data": {"source": "CLIXO:8179", "target": "CLIXO:10618"}}, {"data": {"source": "CLIXO:9977", "target": "CLIXO:10663"}}, {"data": {"source": "CLIXO:8642", "target": "CLIXO:9053"}}, {"data": {"source": "CLIXO:9163", "target": "CLIXO:10672"}}, {"data": {"source": "CLIXO:8 |
keiono
/ clixo-final.cyjs
Created
December 31, 2016 23:38
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| { | |
| "format_version" : "1.0", | |
| "generated_by" : "cytoscape-3.4.0", | |
| "target_cytoscapejs_version" : "~2.1", | |
| "data" : { | |
| "shared_name" : "CLIXO Tree(1)", | |
| "name" : "CLIXO Tree(1)", | |
| "SUID" : 157033, | |
| "__Annotations" : [ "" ], | |
| "selected" : true |
keiono
/ clixo-tree.cyjs
Created
December 30, 2016 19:30
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| {"data": {"name": "CLIXO Tree"}, "elements": {"edges": [{"data": {"target": "CLIXO:9418", "is_tree": "NOT_TREE", "source": "CLIXO:7053", "interaction": "default"}}, {"data": {"target": "CLIXO:9418", "is_tree": "NOT_TREE", "source": "CLIXO:8601", "interaction": "default"}}, {"data": {"target": "CLIXO:8973", "is_tree": "TREE", "source": "CLIXO:6131", "interaction": "default"}}, {"data": {"target": "CLIXO:9461", "is_tree": "TREE", "source": "CLIXO:8389", "interaction": "default"}}, {"data": {"target": "CLIXO:7889", "is_tree": "TREE", "source": "CLIXO:6865", "interaction": "default"}}, {"data": {"target": "CLIXO:8207", "is_tree": "TREE", "source": "CLIXO:6995", "interaction": "default"}}, {"data": {"target": "CLIXO:7883", "is_tree": "TREE", "source": "CLIXO:6798", "interaction": "default"}}, {"data": {"target": "CLIXO:7887", "is_tree": "TREE", "source": "CLIXO:7475", "interaction": "default"}}, {"data": {"target": "CLIXO:7886", "is_tree": "TREE", "source": "CLIXO:6885", "interaction": "default"}}, {"data": {"targ |
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| { | |
| "format_version" : "1.0", | |
| "generated_by" : "cytoscape-3.4.0", | |
| "target_cytoscapejs_version" : "~2.1", | |
| "data" : { | |
| "shared_name" : "test.graphml_3", | |
| "name" : "test.graphml_3", | |
| "SUID" : 866, | |
| "__Annotations" : [ ], | |
| "selected" : true |
keiono
/ tree3.json
Created
December 16, 2016 23:56
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| { | |
| "score": 0.889654636284, | |
| "name": "GO:00SUPER", | |
| "children": [ | |
| { | |
| "namespace": "biological_process", | |
| "score": 0.29738172855, | |
| "name": "GO:0008150", | |
| "children": [ | |
| { |
keiono
/ tree3.json
Created
December 14, 2016 05:58
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| { | |
| "score": 0.889654636284, | |
| "name": "GO:00SUPER", | |
| "children": [ | |
| { | |
| "namespace": "biological_process", | |
| "score": 0.29738172855, | |
| "name": "GO:0008150", | |
| "children": [ | |
| { |
keiono
/ subnet-d3.json
Created
December 13, 2016 01:42
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| { | |
| "shared_name" : "GO:00SUPER", | |
| "score" : 0.889654636284, | |
| "name" : "GO:00SUPER", | |
| "SUID" : 214, | |
| "id" : "GO:00SUPER", | |
| "type" : "", | |
| "selected" : true, | |
| "children" : [ { | |
| "shared_name" : "GO:0008150", |
keiono
/ goWOgenes.cyjs
Created
November 24, 2016 08:15
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| { | |
| "format_version" : "1.0", | |
| "generated_by" : "cytoscape-3.4.0", | |
| "target_cytoscapejs_version" : "~2.1", | |
| "data" : { | |
| "shared_name" : "GO_TREE(1)", | |
| "name" : "GO_TREE(1)", | |
| "SUID" : 455036, | |
| "__Annotations" : [ "" ], | |
| "selected" : true |
keiono
/ gotree2.cyjs
Created
November 23, 2016 19:51
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| { | |
| "format_version" : "1.0", | |
| "generated_by" : "cytoscape-3.4.0", | |
| "target_cytoscapejs_version" : "~2.1", | |
| "data" : { | |
| "shared_name" : "GO_TREE(1)", | |
| "name" : "GO_TREE(1)", | |
| "SUID" : 455036, | |
| "__Annotations" : [ ], | |
| "selected" : true |
keiono
/ Dockerfile
Created
August 29, 2016 20:12
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| # | |
| # Docker image for VIZBI 2015 Tutorial | |
| # | |
| # This is a generic setup for network data analysis and visualization. | |
| # This Distribution includes: | |
| # - Python | |
| # - IPython Notebook | |
| # - Standard data analysis tools, including SciPy and NumPy | |
| # - NetworkX, igraph, and graph-tool | |
| # |