h5py examples for mandy

h5pyexample.py

# first open the file in read/write mode
with h5py.File('/path/to/file.h5', 'r+') as gait_h5:
  
  # loop through all the videos. Here we assume current video is:
  # LL1-B2B/2018-08-22_SPD/LL1-2_003890-F-AX11-5.28571428571429-43291-2-K1808155.avi
  
  # ... somehow get your residual values into a numpy array for current video. This has to be
  # done for all variables you're correcting for. Here using step_width as an example.
  
  step_width_resid = np.array(...)
  
  # now you need to create a dataset from the array for the relavent video (note the '%2F' escaping of '/')
  gait_h5.create_dataset(
    'LL1-B2B%2F2018-08-22_SPD%2FLL1-2_003890-F-AX11-5.28571428571429-43291-2-K1808155.avi/all_strides/step_width_resid',
    data=step_width_resid)