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kenichi/bionode_assembly_dl.txt

Created April 17, 2019 17:28
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bionode_assembly_dl.txt
$ bionode-ncbi search assembly phylos | jq .uid
"874841"
$ bionode-ncbi download assembly 874841
$ cd 874841/
$ gunzip GCA_001865755.1_ASM186575v1_genomic.fna.gz
$ head GCA_001865755.1_ASM186575v1_genomic.fna
>MNPR01000001.1 Cannabis sativa cultivar Cannatonic Cannabis.v1_scf1_q, whole genome shotgun sequence
GTGACAAGAGTAACCCTAACACCAGAGAAGGTGAATCTAGACCTGTTACGTGAAAAACTCAAAAGAATACATTCCCAGAA
ACTTCAAataccaaacccagaaaaacaaacagataAGTAAAGCATGCCATAAACACGAACAGTAAAGCAAGGGATGCGAG
AAACTTACAGTGAAGTGTTGAAACTGGGGGTTCTGTTGTCGATCAAACAAAGGAAATATAGGCTGACAGTGGTGAATGAA
GGATAACAGGGAAATTTGTAGAGTGTTCGAAGGTTTTTTCTTGGTCTGGGGATTTTGCTCTGAAAAACTCGAacaaagtt
ggcaagaaatggaaagtaaccaaatgaaggaaagatggtggcttttataggccaaagtgcatgaggaacaggcaccatca
cctaccaatcgaacggctGGGGgggcgcacgattcgaattcccaagaATCAACAGTTGGATTGATTCgtaattaaggcgg
tggaaacgcttgagtatccgtctgacaccattaatgcaccgtatcaatcaatggacatgaaacgaatcgacatctgcaaa
aagtgaatcgctgcattagAGGCGATCATTAAATGCACCTTCACGCGCTCAAAGCTCGTGCCAGGAAACTGAGGGGTCAA
TCGGAggcacttgaacaagccttgttttctttttcaaataaacaaggcttggggggtaaatgctgcccctgattttgccc
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