kescobo

$ sudo LIBMOUNT_DEBUG=all mount /dev/sda2 /lovelace
148339: libmount:     INIT: library debug mask: 0xffff
148339: libmount:     INIT: library version: 2.34.0
148339: libmount:     INIT:     feature: selinux
148339: libmount:     INIT:     feature: smack
148339: libmount:     INIT:     feature: btrfs
148339: libmount:     INIT:     feature: namespaces
148339: libmount:     INIT:     feature: assert
148339: libmount:     INIT:     feature: debug
Available "LIBMOUNT_DEBUG=<name>[,...]|<mask>" debug masks:

kescobo

using DataFrames
using Turing
using Distributions
using StatsPlots
using Distances
using LinearAlgebra
using StatsModels
using AbstractGPs, KernelFunctions

kescobo

Fri Oct  9 12:20:08 2020: BEGIN INSTALLATION OF './Downloads/YNAB+4_4.3.857_Setup.exe'
0012:err:ole:marshal_object couldn't get IPSFactory buffer for interface {00000131-0000-0000-c000-000000000046}
0012:err:ole:marshal_object couldn't get IPSFactory buffer for interface {6d5140c1-7436-11ce-8034-00aa006009fa}
0012:err:ole:StdMarshalImpl_MarshalInterface Failed to create ifstub, hres=0x80004002
0012:err:ole:CoMarshalInterface Failed to marshal the interface {6d5140c1-7436-11ce-8034-00aa006009fa}, 80004002
0012:err:ole:get_local_server_stream Failed: 80004002
000b:err:winediag:nodrv_CreateWindow Application tried to create a window, but no driver could be loaded.
000b:err:winediag:nodrv_CreateWindow Make sure that your X server is running and that $DISPLAY is set correctly.
0014:err:winediag:nodrv_CreateWindow Application tried to create a window, but no driver could be loaded.
0014:err:winediag:nodrv_CreateWindow Make sure that your X server is running and that $DISPLAY is set correctly.

kescobo

using Random, DataFrames, BenchmarkTools

build_any_df(n) = DataFrame(a = [randstring(6) for _ in 1:n], b = rand(n), c = rand(Int, n), d = repeat(["x", "y"], inner=n÷2))
build_num_df(n) = DataFrame(a = [randstring(6) for _ in 1:n], b = rand(n), c = rand(Int, n), d = rand(Bool, n))
build_mixedrow_df(n) = DataFrame(a = [randstring(6) for _ in 1:n], b = rand(n), c = rand(Int, n), d=rand([1., 1, "str"], n))

a10 = build_any_df(10)
a100 = build_any_df(100)
a1k = build_any_df(1_000)
n10 = build_num_df(10)

kescobo

// Place your key bindings in this file to override the defaultsauto[]
[
    {
        "key": "ctrl+shift+l",
        "command": "workbench.action.editor.changeLanguageMode"
    },
    {
        "key": "ctrl+k m",
        "command": "-workbench.action.editor.changeLanguageMode"
    },

kescobo

open("GCH3000.fasta", "w") do io
  for line in eachline("GCH3000.fastq")
     if startswith(line, "@")
       line = ">" * line[2:end]
     elseif any(c-> !in(c, ['A','T','G','C'], line)
        continue
     end
     write(io, line*'\n')
  end
end

kescobo

Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/vklepacc/.local/lib/python3.6/site-packages (from requests->MetaPhlAn==3.0) (3.0.4)
Requirement already satisfied: idna<2.8,>=2.5 in /home/vklepacc/.local/lib/python3.6/site-packages (from requests->MetaPhlAn==3.0) (2.7)
Requirement already satisfied: setuptools in /home/vklepacc/miniconda3/envs/metaphlan3/lib/python3.6/site-packages (from dendropy->MetaPhlAn==3.0) (46.1.3.post20200330)
Collecting bcbio-gff
  Downloading bcbio-gff-0.6.6.tar.gz (19 kB)
Collecting matplotlib
  Downloading matplotlib-3.2.1-cp36-cp36m-manylinux1_x86_64.whl (12.4 MB)
     |████████████████████████████████| 12.4 MB 51.5 MB/s
Collecting seaborn
  Downloading seaborn-0.10.0-py3-none-any.whl (215 kB)

kescobo

julia> using Pkg; Pkg.activate(tempdir())
Activating new environment at `/var/folders/nl/h0htjvx13dz9l4p42xzw7_8h0000gq/T/Project.toml`

(T) pkg> add BioServices
  Updating registry at `~/.julia/registries/BioJuliaRegistry`
  Updating git-repo `https://github.com/BioJulia/BioJuliaRegistry`
  Updating registry at `~/.julia/registries/General`
  Updating git-repo `https://github.com/JuliaRegistries/General.git`
 Resolving package versions...
  Updating `/private/var/folders/nl/h0htjvx13dz9l4p42xzw7_8h0000gq/T/Project.toml`

kescobo

(v1.3) pkg> activate debug
Activating new environment at `~/repos/scratch/debug/Project.toml`

(debug) pkg> dev https://github.com/Klepac-Ceraj-Lab/echo_analysis
  Updating registry at `~/.julia/registries/BioJuliaRegistry`
  Updating git-repo `https://github.com/BioJulia/BioJuliaRegistry`
  Updating registry at `~/.julia/registries/General`
  Updating git-repo `https://github.com/JuliaRegistries/General.git`
  Updating git-repo `https://github.com/Klepac-Ceraj-Lab/echo_analysis`
 Resolving package versions...

kescobo

(v1.2) pkg> up
  Updating registry at `~/.julia/registries/BioJuliaRegistry`
  Updating git-repo `https://github.com/BioJulia/BioJuliaRegistry`
  Updating registry at `~/.julia/registries/General`
  Updating git-repo `https://github.com/JuliaRegistries/General.git`
  Updating git-repo `https://github.com/JuliaStats/MultivariateStats.jl.git`
  Updating git-repo `https://github.com/JuliaStats/Clustering.jl.git`
 Resolving package versions...
  Updating `~/.julia/environments/v1.2/Project.toml`
 [no changes]