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kieranrcampbell/snakefile_for_rmarkdown

Created May 12, 2017 08:55
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Snakemake to build Rmarkdown files
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snakefile_for_rmarkdown
rule exploratory_analysis:
input:
"data/tec_sceset_qc.rds", "analysis/02_exploratory_analysis.html"
output:
"data/tec_sceset_clusters.rds",
"analysis/02_exploratory_analysis.Rmd",
"data/deseq2_results.csv"
shell:
"Rscript -e \"rmarkdown::render('analysis/02_exploratory_analysis.Rmd')\""
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