Created
May 15, 2017 09:06
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Plot the p-values of a GO analysis
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library(stringr) | |
library(ggplot) | |
library(dplyr) | |
## Assuming "go" has columns "term" and "q_value" | |
go_top <- head(go, n = 10) | |
go_top$term <- str_to_title(go_top$term) | |
terms_sorted <- arrange(go_top, desc(q_value)) %>% .$term | |
go_top$term <- factor(go_top$term, levels = terms_sorted) | |
ggplot(go_top, aes(x = term, y = -log10(q_value))) + | |
geom_point() + | |
coord_flip() + | |
theme(axis.title.y = element_blank(), legend.position = "none") + | |
ylab(expression(paste("-", log[10], " q-value"))) + | |
theme(#legend.position = c(-.2, -.14), legend.direction = "horizontal", | |
legend.position = c(0, 0), legend.direction = "horizontal", | |
axis.text = element_text(size = 8), | |
axis.title = element_text(size = 10), | |
legend.title = element_text(size = 11), | |
legend.text = element_text(size = 10)) |
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