R launcher for Nvim-R on an LSF cluster

r-launcher.sh

#!/usr/bin/env bash

while getopts ":n:c:q:" option; do
    case "$option" in
        n)
            cores="$OPTARG"
            ;;
        m)
            mem="$OPTARG"
            ;;
        q)
            queue="$OPTARG"
            ;;
        *)
            break
    esac
done

shift $(($OPTIND - 1))

mem=${mem-12000}
cores=${cores-4}
queue=${queue-long}

bsub -q$queue -Is -n$cores -M$mem -R "span[hosts=1] select[mem>$mem] rusage[mem=$mem]" "$(which R) $@"

usage.md

Nvim-R R launcher on an LSF cluster

Usage

Configure Nvim-R inside ~/.vimrc as follows:

let R_path = "~/.R" " or whatever
let R_launcher = "r-launcher.sh"

To launch R, either use the default options and <leader>rf, or perform a custom launch with <leader>rc and enter the desired command line options, .e.g.

-n2 --quiet