Created
August 23, 2020 03:26
-
-
Save kmuthukk/07b88a99c4657e30d0ee17beda0157c4 to your computer and use it in GitHub Desktop.
Loading CSV file to YB YSQL in smaller batches (rather than one large ACID transaction)
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# sudo pip3 install pandas | |
# sudo pip3 install sqlalchemy | |
# sudo pip3 install psycopg2 | |
# Imports | |
import pandas as pd | |
from sqlalchemy import create_engine | |
import psycopg2; | |
import time | |
# Params | |
dbname="yugabyte" | |
user="yugabyte" | |
password="yugabyte" | |
host="localhost" | |
port=5433 | |
# You can download the sample data file from here: | |
# curl -s -O https://raw.githubusercontent.com/yugabyte/yugabyte-db/master/src/postgres/src/test/regress/data/airport-codes.csv | |
# | |
csv_file="airport-codes.csv" | |
def execute_ddl(host, dbname, user, password, port, ddl): | |
conn = psycopg2.connect("host={} dbname={} user={} password={} port={}" | |
.format(host, dbname, user, password, port)) | |
conn.set_session(autocommit=True) | |
cur = conn.cursor() | |
cur.execute(ddl) | |
print("EXECUTED: {}".format(ddl)) | |
print("====================") | |
def load_data(host, dbname, user, password, port, csv_file, chunksize): | |
# Instantiate sqlachemy.create_engine object | |
engine = create_engine("postgresql://{}:{}@{}:{}/{}".format(user, password, host, port, dbname)) | |
# Create an iterable that will read chunksize rows at a time. | |
# Note: If the CSV doesn't have a header pass column names as an argument. | |
# For example, | |
# columns = ["sepal_length", "sepal_width", "petal_length", "petal_width", "class"] | |
# for data_frame in pd.read_csv(csv_file,names=columns,chunksize=1000): | |
# ... | |
# | |
for data_frame in pd.read_csv(csv_file,chunksize=chunksize): | |
data_frame.to_sql( | |
"airports", # table name | |
engine, | |
index=False, | |
if_exists="append" # if the table already exists, append this data | |
) | |
drop_table_ddl = """DROP TABLE IF EXISTS airports""" | |
create_table_ddl = """CREATE TABLE airports( | |
ident TEXT, | |
type TEXT, | |
name TEXT, | |
elevation_ft INT, | |
continent TEXT, | |
iso_country CHAR(2), | |
iso_region CHAR(7), | |
municipality TEXT, | |
gps_code TEXT, | |
iata_code TEXT, | |
local_code TEXT, | |
coordinates TEXT, | |
PRIMARY KEY (ident))""" | |
idx_ddl = "CREATE INDEX airport_type_region_idx ON airports((type, iso_region) HASH, ident ASC)" | |
execute_ddl(host, dbname, user, password, port, drop_table_ddl) | |
execute_ddl(host, dbname, user, password, port, create_table_ddl) | |
execute_ddl(host, dbname, user, password, port, idx_ddl) | |
start = time.time() | |
load_data(host, dbname, user, password, port, csv_file, chunksize=256) | |
now = time.time() | |
print("Time: %s secs" % (now - start)) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment