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November 5, 2011 07:03
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stat_aggr2d and stat_aggrhex in ggplot2
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# test with R 2.14.0 and ggplot2 0.8.9 | |
library(ggplot2) | |
# define stat_aggr2d | |
StatAggr2d <- proto(Stat, { | |
objname <- "aggr2d" | |
default_aes <- function(.) aes(fill = ..value..) | |
required_aes <- c("x", "y", "z") | |
default_geom <- function(.) GeomRect | |
calculate <- function(., data, scales, binwidth = NULL, bins = 30, breaks = NULL, origin = NULL, drop = TRUE, fun = mean, ...) { | |
range <- list( | |
x = scales$x$output_set(), | |
y = scales$y$output_set() | |
) | |
# Determine binwidth, if omitted | |
if (is.null(binwidth)) { | |
binwidth <- c(NA, NA) | |
if (is.integer(data$x)) { | |
binwidth[1] <- 1 | |
} else { | |
binwidth[1] <- diff(range$x) / bins | |
} | |
if (is.integer(data$y)) { | |
binwidth[2] <- 1 | |
} else { | |
binwidth[2] <- diff(range$y) / bins | |
} | |
} | |
stopifnot(is.numeric(binwidth)) | |
stopifnot(length(binwidth) == 2) | |
# Determine breaks, if omitted | |
if (is.null(breaks)) { | |
if (is.null(origin)) { | |
breaks <- list( | |
fullseq(range$x, binwidth[1]), | |
fullseq(range$y, binwidth[2]) | |
) | |
} else { | |
breaks <- list( | |
seq(origin[1], max(range$x) + binwidth[1], binwidth[1]), | |
seq(origin[2], max(range$y) + binwidth[2], binwidth[2]) | |
) | |
} | |
} | |
stopifnot(is.list(breaks)) | |
stopifnot(length(breaks) == 2) | |
stopifnot(all(sapply(breaks, is.numeric))) | |
names(breaks) <- c("x", "y") | |
xbin <- cut(data$x, sort(breaks$x), include.lowest=TRUE) | |
ybin <- cut(data$y, sort(breaks$y), include.lowest=TRUE) | |
if (is.null(data$weight)) data$weight <- 1 | |
ans <- ddply(data.frame(data, xbin, ybin), .(xbin, ybin), function(d) data.frame(value = fun(d$z))) | |
within(ans,{ | |
xint <- as.numeric(xbin) | |
xmin <- breaks$x[xint] | |
xmax <- breaks$x[xint + 1] | |
yint <- as.numeric(ybin) | |
ymin <- breaks$y[yint] | |
ymax <- breaks$y[yint + 1] | |
}) | |
} | |
}) | |
stat_aggr2d <- StatAggr2d$build_accessor() | |
# define stat_aggrhex | |
StatAggrhex <- proto(Stat, { | |
objname <- "aggrhex" | |
default_aes <- function(.) aes(fill = ..value..) | |
required_aes <- c("x", "y", "z") | |
default_geom <- function(.) GeomHex | |
calculate <- function(., data, scales, binwidth = NULL, bins = 30, na.rm = FALSE, fun = mean, ...) { | |
try_require("hexbin") | |
data <- remove_missing(data, na.rm, c("x", "y"), name="stat_hexbin") | |
if (is.null(binwidth)) { | |
binwidth <- c( | |
diff(scales$x$input_set()) / bins, | |
diff(scales$y$input_set() ) / bins | |
) | |
} | |
try_require("hexbin") | |
x <- data$x | |
y <- data$y | |
# Convert binwidths into bounds + nbins | |
xbnds <- c( | |
round_any(min(x), binwidth[1], floor) - 1e-6, | |
round_any(max(x), binwidth[1], ceiling) + 1e-6 | |
) | |
xbins <- diff(xbnds) / binwidth[1] | |
ybnds <- c( | |
round_any(min(y), binwidth[1], floor) - 1e-6, | |
round_any(max(y), binwidth[2], ceiling) + 1e-6 | |
) | |
ybins <- diff(ybnds) / binwidth[2] | |
# Call hexbin | |
hb <- hexbin( | |
x, xbnds = xbnds, xbins = xbins, | |
y, ybnds = ybnds, shape = ybins / xbins, | |
IDs = TRUE | |
) | |
value <- tapply(data$z, hb@cID, fun) | |
# Convert to data frame | |
data.frame(hcell2xy(hb), value) | |
} | |
}) | |
stat_aggrhex <- StatAggrhex$build_accessor() | |
# example | |
xs <- runif(100,-1,1) | |
ys <- runif(100,-1,1) | |
rts <- rnorm(100) | |
testDF <- data.frame("x"=xs,"y"=ys,"rt"=rts) | |
ggplot(data = testDF,aes(x=x,y=y, z=rts)) + stat_aggr2d(bins=3) | |
ggplot(data = testDF,aes(x=x,y=y, z=rts)) + stat_aggr2d(bins=3, fun = function(x) sum(x^2)) | |
ggplot(data = testDF,aes(x=x,y=y, z=rts)) + stat_aggrhex(bins=3) | |
ggplot(data = testDF,aes(x=x,y=y, z=rts)) + stat_aggrhex(bins=3, fun = function(x) sum(x^2)) |
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Error in proto(Stat, { : object 'Stat' not found
Where Stat object came from?