covid-net

FROM tensorflow/tensorflow:1.15.2-py3
LABEL maintainer="kojix2 <[email protected]>"
RUN set -x && \
    apt update -y && \
    apt install -y wget unzip libsm6 libxrender1 libxext-dev && \
    pip3 install --upgrade pip && \
    pip3 install scikit-learn && \
    pip3 install matplotlib && \
    pip3 install opencv-python 
RUN wget https://github.com/lindawangg/COVID-Net/archive/master.zip 
RUN unzip master.zip
CMD echo "now running"

Download automatically

FROM tensorflow/tensorflow:1.15.2-py3
LABEL maintainer="kojix2 <[email protected]>"
RUN set -x && \
    apt update -y && \
    apt install -y wget unzip libsm6 libxrender1 libxext-dev && \
    pip3 install --upgrade pip && \
    pip3 install scikit-learn && \
    pip3 install matplotlib && \
    pip3 install opencv-python && \
    pip3 install gdown
RUN wget https://github.com/lindawangg/COVID-Net/archive/master.zip 
RUN unzip master.zip

# Download COVIDNet-CXR4-A
WORKDIR /COVID-Net-master/models/COVIDNet-CXR4-A
RUN gdown https://drive.google.com/uc?id=1dCU5NV_-DKMKPUIJxO2MFU603LFkx5bd
RUN gdown https://drive.google.com/uc?id=1cQ6Z3esdyTDuZJqc8lu8tL0sJ6GZCosI
RUN gdown https://drive.google.com/uc?id=1-GW2qlGYcpNLgjy-q_f2XNYSlMzAbC8F
RUN gdown https://drive.google.com/uc?id=1zGS8sA4HB6cnWfRlL8g18QJi_4tq6hNF

# Download COVIDNet-SEV-GEO
WORKDIR /COVID-Net-master/models/COVIDNet-SEV-GEO
RUN gdown https://drive.google.com/uc?id=1vmr5gADYVokAYz-6kGQ-INb_r0weoWWD
RUN gdown https://drive.google.com/uc?id=18zSwSRybX2Zy5jm0E4alBuGGvHAuuvXd
RUN gdown https://drive.google.com/uc?id=10aL3s_TLRSCxZ0E2OUIjy9rLa-fTOtUj
RUN gdown https://drive.google.com/uc?id=1Sbp4NetlGzEM0VwxkZ1Lq-0fjprdjdCR

# Download COVIDNet-SEV-OPC
WORKDIR /COVID-Net-master/models/COVIDNet-SEV-OPC
RUN gdown https://drive.google.com/uc?id=11Ju0YeIitzS2GgXJ4U5J3M87tF683-sM
RUN gdown https://drive.google.com/uc?id=1m0dXmUueCx4v9PbZhanmbt0ECe63tMKA
RUN gdown https://drive.google.com/uc?id=1oaILEyuMcHWQS68l4hrMPyWgosnqfAu0
RUN gdown https://drive.google.com/uc?id=1m5eJwhuFccZwyGl8T4DRfq8x3rgkqCEC

WORKDIR /COVID-Net-master
CMD echo "now running"

python inference.py --weightspath models/COVIDNet-CXR4-A \
                    --metaname model.meta \
                    --ckptname model-18540 \
                    --imagepath assets/ex-covid.jpeg