Created
March 6, 2016 16:33
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Mixplots of normal mixtures in R
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library(mclust) | |
mixplot <- function(ts,plot=TRUE) { | |
rng=seq(from=min(ts),to=max(ts),by=(max(ts)-min(ts))/1000) | |
mcp = Mclust(ts)$par | |
mat=cbind(mcp$mean,mcp$var$sigmasq,mcp$pro) | |
dens=apply(mat[,-3],1,function(x) dnorm(rng,mean=x[1],sd=sqrt(x[2]))) | |
f=dens%*%mat[,3] | |
if (plot) { | |
hist(ts,breaks=100,border="gray",probability=TRUE,main="") | |
lines(rng,f,lty=2) | |
} | |
result = list(mean=as.vector(mcp$mean), sigmasq=as.vector(mcp$var$sigmasq),proportion=as.vector(mcp$pro)) | |
return(result) | |
} | |
# you feed it data and out you get a histogram with | |
# a line plot of a normal mixture estimated using the Mclust | |
# package | |
# the function plots by default, but you can supress to chart | |
# and only get the Mclust output | |
mixplot(c(rnorm(1000,0,0.5),rnorm(400,1.5,0.1),rnorm(600,2.5,0.5))) |
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