kortschak

type Kmer uint32

func (self *Index) GetPositionsKmer(kmer Kmer) (positions []int, err os.Error) {
        if kmer > self.kMask {
                return nil, bio.NewError("Kmer out of range", 0, []Kmer{kmer, self.kMask})
        }

        i := Kmer(0)
        if kmer != 0 { // special case: An has no predecessor
                i = self.finger[kmer-1]

kortschak

{
        // preprocessing

        dp := make(chan *DP, self.cores)
        for i := 0; i < self.cores; i++ {
                dp <- &DP{
                        a:       self.a,
                        b:       self.b,
                        minLen:  minLen,
                        maxDiff: maxDiff,

kortschak

func (self *Morass) write(writing sortable) (err os.Error) {
        defer func() {
                self.error <- err
                self.done <- writing[:0]
        }()

        select {
        case <-self.error:
        default:
        }

kortschak

include $(GOROOT)/src/Make.inc

TARG=testtest

GOFILES=\
        test.go\

include $(GOROOT)/src/Make.pkg

kortschak

From f5cc658536f716b5686a8cd158ad556b77a023c9 Mon Sep 17 00:00:00 2001
From: kortschak <dan.kortschak@adelaide.edu.au>
Date: Sat, 14 Jan 2012 18:00:49 +1030
Subject: [PATCH] time changes - weekly.2011-12-01

---
 consoleview.go |    9 ++++-----
 jsonio.go      |   18 +++++++++---------
 legacyio.go    |    8 ++++----
 main.go        |    4 +++-

kortschak

package main

import (
	"fmt"
	"reflect"
	"runtime"
	"unsafe"
)

type commonType struct {

kortschak

package main

import (
	"bufio"
	"crypto/rand"
	"crypto/rsa"
	"crypto/tls"
	"crypto/x509"
	"crypto/x509/pkix"
	"encoding/pem"

kortschak

//Use morass when you don't want your data to be a quagmire.
//
//Sort data larger than can fit in memory.
//
// morass məˈras/
// 1. An area of muddy or boggy ground.
// 2. A complicated or confused situation.
package morass

// Copyright ©2011 Dan Kortschak <dan.kortschak@adelaide.edu.au>

kortschak

package main

import (
	"fmt"
	"testing"
)

// An offset slice seems to be the only way to implement the C idiom to
// an offset (by o) a view (v) on an array (a):
//  int *v, o;

kortschak

package main

import (
	"crypto/sha256"
	"fmt"
	"math/rand"
	"os"
	"time"
)