krishna katyal krishnakatyal
krishnakatyal
/ gist:66dcd23525138f2b5cf89d46bbbed9dc
Created
April 9, 2020 20:24
— forked from FloWuenne/gist:b4d1729b5ec2ceecfb4ce532e0fd8d67
Plot PCA for ethnicity from any given VCF file combined with 1000 genomes data
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ## Plot PCA for ethnicity of a given VCF file | |
| ## Import publication theme | |
| ## A nice R ggplot theme that I found online. Original can be found here: | |
| ## https://rpubs.com/Koundy/71792 | |
| theme_Publication <- function(base_size=14, base_family="helvetica") { | |
| library(grid) | |
| library(ggthemes) | |
| (theme_foundation(base_size=base_size, base_family=base_family) |