Created
December 2, 2016 21:48
-
-
Save kwilcox/1a42e95c178af529b9f468fac2050ee5 to your computer and use it in GitHub Desktop.
CC conda issue
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| /data/Development/compliance-checker stringerror ✔ | |
| $ conda list | |
| # packages in environment at /home/kwilcox/miniconda3/envs/cc35: | |
| # | |
| Using Anaconda API: https://api.anaconda.org | |
| arrow 0.8.0 py35_0 conda-forge | |
| ca-certificates 2016.9.26 0 conda-forge | |
| certifi 2016.9.26 py35_0 conda-forge | |
| cf_units 1.1.3 py35_0 conda-forge | |
| curl 7.49.1 1 conda-forge | |
| expat 2.1.0 2 conda-forge | |
| hdf4 4.2.12 0 conda-forge | |
| hdf5 1.8.17 7 conda-forge | |
| icu 56.1 4 conda-forge | |
| isodate 0.5.4 py35_0 conda-forge | |
| jinja2 2.8 py35_1 conda-forge | |
| jpeg 9b 0 conda-forge | |
| libiconv 1.14 3 conda-forge | |
| libnetcdf 4.4.1.1 0 conda-forge | |
| libxml2 2.9.3 9 conda-forge | |
| libxslt 1.1.29 1 conda-forge | |
| lxml 3.6.4 py35_1 conda-forge | |
| markupsafe 0.23 py35_0 conda-forge | |
| ncurses 5.9 10 conda-forge | |
| netcdf4 1.2.5 np111py35_0 conda-forge | |
| openssl 1.0.2h 3 conda-forge | |
| owslib 0.13.0 py35_0 conda-forge | |
| pip 9.0.1 py35_0 conda-forge | |
| py 1.4.31 py35_0 conda-forge | |
| pygeoif 0.6 py35_1 conda-forge | |
| pyproj 1.9.5.1 py35_0 conda-forge | |
| pytest 3.0.4 py35_0 conda-forge | |
| python 3.5.2 2 conda-forge | |
| python-dateutil 2.6.0 py35_0 conda-forge | |
| pytz 2016.7 py35_0 conda-forge | |
| readline 6.2 0 conda-forge | |
| requests 2.12.1 py35_0 conda-forge | |
| setuptools 29.0.1 py35_1 conda-forge | |
| six 1.10.0 py35_1 conda-forge | |
| sqlite 3.13.0 1 conda-forge | |
| tk 8.5.19 0 conda-forge | |
| udunits2 2.2.20 1 conda-forge | |
| wheel 0.29.0 py35_0 conda-forge | |
| xz 5.2.2 0 conda-forge | |
| zlib 1.2.8 3 conda-forge | |
| httpretty 0.8.14 py35_0 defaults | |
| libgfortran 3.0.0 1 defaults | |
| mkl 11.3.3 0 defaults | |
| numpy 1.11.2 py35_0 defaults |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ===================================================================== FAILURES ===================================================================== | |
| ____________________________________________________________ TestCF.test_check_calendar ____________________________________________________________ | |
| self = test_check_calendar ( compliance_checker.tests.test_cf:TestCF.test_check_calendar ) | |
| def test_check_calendar(self): | |
| dataset = self.load_dataset(STATIC_FILES['example-grid']) | |
| results = self.cf.check_calendar(dataset) | |
| for r in results: | |
| self.assertTrue(r.value) | |
| dataset = self.load_dataset(STATIC_FILES['bad']) | |
| results = self.cf.check_calendar(dataset) | |
| scored, out_of, messages = self.get_results(results) | |
| > assert "Variable time should have a valid calendar: 'nope' is not a valid calendar" in messages | |
| E AssertionError: assert "Variable time should have a valid calendar: 'nope' is not a valid calendar" in ["Variable bad_time_2 should have a v | |
| alid calendar: 'nope' is not a valid calendar"] | |
| compliance_checker/tests/test_cf.py:748: AssertionError | |
| ________________________________________________________ TestCF.test_check_time_coordinate _________________________________________________________ | |
| self = test_check_time_coordinate ( compliance_checker.tests.test_cf:TestCF.test_check_time_coordinate ) | |
| def test_check_time_coordinate(self): | |
| dataset = self.load_dataset(STATIC_FILES['example-grid']) | |
| results = self.cf.check_time_coordinate(dataset) | |
| for r in results: | |
| self.assertTrue(r.value) | |
| dataset = self.load_dataset(STATIC_FILES['bad']) | |
| results = self.cf.check_time_coordinate(dataset) | |
| scored, out_of, messages = self.get_results(results) | |
| > assert 'time does not have correct time units' in messages | |
| E AssertionError: assert 'time does not have correct time units' in ['bad_time_1 does not have units', 'bad_time_2 does not have correct time | |
| units'] | |
| compliance_checker/tests/test_cf.py:735: AssertionError | |
| __________________________________________________________ TestCF.test_naming_conventions __________________________________________________________ | |
| self = test_naming_conventions ( compliance_checker.tests.test_cf:TestCF.test_naming_conventions ) | |
| def test_naming_conventions(self): | |
| ''' | |
| Section 2.3 Naming Conventions | |
| Variable, dimension and attribute names should begin with a letter and be composed of letters, digits, and underscores. | |
| ''' | |
| dataset = self.load_dataset(STATIC_FILES['rutgers']) | |
| results = self.cf.check_naming_conventions(dataset) | |
| num_var = len(dataset.variables) | |
| result_dict = {result.name: result for result in results} | |
| result = result_dict[u'§2.3 Naming Conventions for variables'] | |
| assert result.value == (num_var, num_var) | |
| dataset = self.load_dataset(STATIC_FILES['bad']) | |
| results = self.cf.check_naming_conventions(dataset) | |
| result_dict = {result.name: result for result in results} | |
| result = result_dict[u'§2.3 Naming Conventions for variables'] | |
| > assert result.value == (13, 14) | |
| E AssertionError: assert (14, 15) == (13, 14) | |
| E At index 0 diff: 14 != 13 | |
| E Full diff: | |
| E - (14, 15) | |
| E + (13, 14) | |
| compliance_checker/tests/test_cf.py:120: AssertionError | |
| ___________________________________________________ TestFeatureDetection.test_trajectory_single ____________________________________________________ | |
| self = <compliance_checker.tests.test_feature_detection.TestFeatureDetection testMethod=test_trajectory_single> | |
| def test_trajectory_single(self): | |
| ''' | |
| Ensures trajectory-single detection works | |
| ''' | |
| with Dataset(resources.STATIC_FILES['trajectory-single']) as nc: | |
| for variable in util.get_geophysical_variables(nc): | |
| > assert util.is_single_trajectory(nc, variable), "{} is trajectory-single".format(variable) | |
| E AssertionError: temperature is trajectory-single | |
| E assert False | |
| E + where False = <function is_single_trajectory at 0x7f8810e696a8>(<class 'netCDF4._netCDF4.Dataset'>\nroot group (NETCDF3_CLASSIC | |
| data model, file format NETCDF3):\n dimensions(sizes)... lat(time), float32 lon(time), float32 z(time), float32 temperature(time)\n groups: \n | |
| , 'temperature') | |
| E + where <function is_single_trajectory at 0x7f8810e696a8> = util.is_single_trajectory | |
| compliance_checker/tests/test_feature_detection.py:64: AssertionError | |
| ====================================================== 4 failed, 113 passed in 50.54 seconds ======================================================= |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment