Svidro

Collections of scripts harvested mainly from Pete, but also picked up from the forums
If you are starting with 0.2.0m4+ START HERE: https://petebankhead.github.io/qupath/2019/08/21/scripting-in-v020.html

TOC

Access objects in other project images.groovy - in later versions of 0.2.0M#, access the hierarchies of other images

Access other project images or data.groovy

Access project metadata.groovy - interact with user defined, per image metadata. Useful for sorting projects.

ekatrukha

//ImageJ macro making a tilted movie out of stack
//uses shear transform + rotation
//Eugene Katrukha katpyxa at gmail.com
requires("1.48h");

sTitle=getTitle();
sMovieTitle=sTitle+"_tilt_movie";
setBatchMode(true);

//Dialog

mutterer

macro "Better Wand Tool - C000T0f10BT7f10WTff10T" {
   if (!isOpen("ROI Manager")) run("ROI Manager...");
   smoothness= call('ij.Prefs.get','bwt.selectSmoothness',3);
   getCursorLoc(x, y, z, flags);
   id=getImageID;
   setBatchMode(1);
   run("Select None");
   run("Duplicate...","title=a");
   run("Gaussian Blur...", "radius="+smoothness);
   id2=getImageID;

mutterer

run("Boats");
makeLut("#009100","#ccff42");

function makeLut(a,b) {
  a = Color.toArray(a);
  b = Color.toArray(b);
  reds=newArray(256);
  greens=newArray(256);
  blues=newArray(256);
  for (i=0;i<reds.length;i++) {

mutterer

// emoji from https://emojipedia.org/
url="https://emojipedia-us.s3.dualstack.us-west-1.amazonaws.com/thumbs/120/whatsapp/273/face-with-medical-mask_1f637.png";
hues=8;
open(url);
setBatchMode(1);
run("Duplicate...","title=temp");
Color.setForeground("blue");floodFill(0, 0);
run("Size...", "width="+Image.width+" height="+Image.height+" depth="+hues+" constrain average interpolation=Bilinear");
run("HSB Stack");
Stack.getDimensions(width, height, channels, slices, frames);

mutterer

var r =6;

macro "2D Gaussian Fit Tool - C00cT0f16GTbf16f" {
   setBatchMode(1);
   getCursorLoc(x, y, z, f);
   while (f&16>0) {
   Overlay.clear;
   getCursorLoc(x, y, z, f);

   makeRectangle(x-r,y-r,2*r,2*r);