mutterer

abs(n)
acos(n)
Array.concat(array1, array2)
Array.copy(array)
Array.deleteValue(array, value)
Array.deleteIndex(array, index)
Array.fill(array, value)
Array.filter(array, filter)
Array.findMaxima(array, tolerance)
Array.findMinima(array, tolerance)

mutterer

// This tool draws a line, and overlays its profile and some infos
// 2023-01-22 fixed profile origin by moving Overlay.moveTo after setColor.

 macro "Line and Profile Tool -C00bL1de0L1ee1" {
        getCursorLoc(x, y, z, flags);
        xstart = x; ystart = y;
        x2=x; y2=y;        
        while (true) {
            getCursorLoc(x, y, z, flags);
            if (flags&16==0) {

mutterer

macro "inches_mm_toggle Action Tool - C000T0608iT3608nT8f08mTef08mL0dd0" {
    getVoxelSize(width, height, depth, unit);
    if (unit.startsWith("inch")) {
        width=width*25.4;
        height=height*25.4;
        depth=depth*25.4;
        unit = "mm";
    } else if (unit.startsWith("mm")) {
        width=width/25.4;
        height=height/25.4;

mutterer

macro "Adjust Overlay Transparency Tool - C00cT0f20A" {
   getCursorLoc(x, y, z, flags);
   px=x;
   while (flags&16>0) {
     getCursorLoc(x, y, z, flags);
     if (x!=px) {
       Overlay.activateSelectionAndWait(Overlay.size-1);
       run("Properties... ","opacity="+100*x/getWidth+" transparent");
       Overlay.removeSelection(Overlay.size-1);
       Overlay.addSelection;

mutterer

macro "Curtain Tool - C00cT0f20A" {
   getCursorLoc(x, y, z, flags);
   setBatchMode(true);
   id=getImageID;
   run("Duplicate...","title=temp");
   // here goes the image transform to preview
   run("Gaussian Blur...","sigma=5");
   // 
   id2=getImageID;
   px=x;

mutterer

// ImageJ 1.53t Linegraph Anlayzer demo

run("Line Graph");

// calibrate and set plot origin
makeRectangle(80, 27, 409, 261);
Roi.getBounds(x, y, width, height);
calibrateFormRect(400,700,0,800);

function calibrateFormRect(xmin,xmax,ymin,ymax) {

mutterer

#@ File saveLocation (label="Location of MIDI save file")

/**
 * Testing Spots to Sound using MIDI
 * Each hit is given a unique note based on some metric and intensity is related to volume
 * 
 * = AUTHOR INFORMATION =
 * Code written by Olivier Burri, EPFL - SV - PTECH - BIOP
 * for Samuel Vernon, McCabe Lab
 * 2022.08.23

mutterer

// a simplified IJ macro version of https://github.com/BIOP/ijp-LaRoMe
roiManager("reset");
run("Duplicate...","title=temp");
id=getImageID;
h=getHeight;
w=getWidth;
for (y=0;y<h;y++){
	for (x=0;x<w;x++){
		if (getPixel(x,y)>0) {
			doWand(x,y);

mutterer

var r =6;

macro "2D Gaussian Fit Tool - C00cT0f16GTbf16f" {
   setBatchMode(1);
   getCursorLoc(x, y, z, f);
   while (f&16>0) {
   Overlay.clear;
   getCursorLoc(x, y, z, f);

   makeRectangle(x-r,y-r,2*r,2*r);

mutterer

// see https://twitter.com/Maurice_Y_Lee/status/1487093624982499330

// show center of mass
makePoint(getValue('XM'),getValue('YM'),"medium green hybrid");
Overlay.addSelection('green');

// gaussian fit
makePoint(gaussianFit(true),gaussianFit(false),"medium red hybrid");
Overlay.addSelection('red');