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lancelothk/fastq2fasta.sh

Created August 13, 2014 03:53
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fastq2fasta.sh
#!/bin/bash
if [ ! -d "$3" ]; then
mkdir $3
fi
for file in $2/*
do
outputFile=${file/$2/$3}
#echo "perl $1/fastq2fasta_out.pl $file ${outputFile/fastq/fasta}"
perl $1/fastq2fasta_out.pl $file ${outputFile}.fasta
done
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