(partial) EasyBuild log for failed build of /tmp/eb-73ly5_3c/files_pr25636/c/CellBender/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb (PR(s) #25636)

CellBender-0.3.2-foss-2024a-CUDA-12.6.0_partial.log

== 2026-04-14 16:57:43,830 easyconfig.py:2900 DEBUG Obtained valid short module name scikit-learn/1.5.2-gfbf-2024a
== 2026-04-14 16:57:43,830 easyconfig.py:2869 DEBUG Determining full module name for {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-learn', 'version': '1.5.2', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} (force_visible: False)
== 2026-04-14 16:57:43,830 easyconfig.py:2846 DEBUG No alternative software name specified to determine module name with
== 2026-04-14 16:57:43,831 utilities.py:114 DEBUG Module name scikit-learn/1.5.2-gfbf-2024a validated
== 2026-04-14 16:57:43,831 easyconfig.py:2877 DEBUG Obtained valid full module name scikit-learn/1.5.2-gfbf-2024a
== 2026-04-14 16:57:43,831 easyconfig.py:938 INFO Validating easyconfig
== 2026-04-14 16:57:43,831 easyconfig.py:943 INFO Checking OS dependencies
== 2026-04-14 16:57:43,831 easyconfig.py:1017 INFO OS dependencies ok: []
== 2026-04-14 16:57:43,831 easyconfig.py:948 INFO Checking skipsteps
== 2026-04-14 16:57:43,831 easyconfig.py:969 INFO Checking build option lists
== 2026-04-14 16:57:43,831 easyconfig.py:972 INFO Checking licenses
== 2026-04-14 16:57:43,831 easyconfig.py:2869 DEBUG Determining full module name for Raw CellBender EasyConfig (force_visible: False)
== 2026-04-14 16:57:43,831 easyconfig.py:2846 DEBUG No alternative software name specified to determine module name with
== 2026-04-14 16:57:43,831 utilities.py:114 DEBUG Module name CellBender/0.3.2-foss-2024a-CUDA-12.6.0 validated
== 2026-04-14 16:57:43,831 easyconfig.py:2877 DEBUG Obtained valid full module name CellBender/0.3.2-foss-2024a-CUDA-12.6.0
== 2026-04-14 16:57:43,831 easyconfig.py:2898 DEBUG Determining short module name for Raw CellBender EasyConfig (force_visible: False)
== 2026-04-14 16:57:43,831 easyconfig.py:2846 DEBUG No alternative software name specified to determine module name with
== 2026-04-14 16:57:43,831 utilities.py:114 DEBUG Module name CellBender/0.3.2-foss-2024a-CUDA-12.6.0 validated
== 2026-04-14 16:57:43,831 easyconfig.py:2900 DEBUG Obtained valid short module name CellBender/0.3.2-foss-2024a-CUDA-12.6.0
== 2026-04-14 16:57:43,831 mns.py:170 DEBUG Checking whether 'CellBender/0.3.2-foss-2024a-CUDA-12.6.0' is a module name for software with name 'CellBender' via regex ^CellBender(/\S+)?$: True
== 2026-04-14 16:57:43,831 easyconfig.py:2910 DEBUG Determining module subdir for Raw CellBender EasyConfig
== 2026-04-14 16:57:43,831 easyconfig.py:2912 DEBUG Obtained subdir 
== 2026-04-14 16:57:43,832 pythonbundle.py:76 INFO exts_default_options: {'buildcmd': None, 'check_ldshared': None, 'click_autocomplete_bins': None, 'download_dep_fail': None, 'dummy_package': None, 'fix_python_shebang_for': ['bin/*'], 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_build_isolation': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': None, 'req_py_minver': None, 'max_py_majver': None, 'max_py_minver': None, 'sanity_pip_check': True, 'sanity_check_pip_list': None, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}}
== 2026-04-14 16:57:43,832 easyblock.py:5133 INFO Obtained application instance for CellBender (easyblock: PythonBundle)
== 2026-04-14 16:57:43,832 easyblock.py:5146 DEBUG Skip set to False
== 2026-04-14 16:57:43,832 easyconfig.py:1829 INFO Generating template values...
== 2026-04-14 16:57:43,832 templates.py:316 DEBUG config: CellBender EasyConfig @ /tmp/eb-73ly5_3c/files_pr25636/c/CellBender/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb
== 2026-04-14 16:57:43,833 templates.py:352 DEBUG version found in easyconfig is 0.3.2
== 2026-04-14 16:57:43,833 templates.py:468 DEBUG name: bitbucket_account, config: %(namelower)s
== 2026-04-14 16:57:43,833 templates.py:468 DEBUG name: github_account, config: %(namelower)s
== 2026-04-14 16:57:43,833 templates.py:468 DEBUG name: name, config: CellBender
== 2026-04-14 16:57:43,833 templates.py:468 DEBUG name: version, config: 0.3.2
== 2026-04-14 16:57:43,833 templates.py:468 DEBUG name: versionsuffix, config: -CUDA-%(cudaver)s
== 2026-04-14 16:57:43,833 templates.py:468 DEBUG name: versionprefix, config: 
== 2026-04-14 16:57:43,833 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2026-04-14 16:57:43,833 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2026-04-14 16:57:43,833 easyconfig.py:1848 INFO Template values: arch='x86_64', bitbucket_account='cellbender', cuda_cc_cmake='90', cuda_cc_nvhpc='cc90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_cc_space_sep_no_period='90', cuda_compute_capabilities='9.0', cuda_int_comma_sep='90', cuda_int_semicolon_sep='90', cuda_int_space_sep='90', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', cudamajver='12', cudaminver='6', cudashortver='12.6', cudaver='12.6.0', github_account='cellbender', module_name='CellBender/0.3.2-foss-2024a-CUDA-12.6.0', mpi_cmd_prefix='mpirun -n 1', name='CellBender', nameletter='C', nameletterlower='c', namelower='cellbender', pymajver='3', pyminver='12', pyshortver='3.12', pyver='3.12.3', rpath_enabled='true', software_commit='', sysroot='', toolchain_name='foss', toolchain_version='2024a', version='0.3.2', version_major='0', version_major_minor='0.3', version_major_minor_patch='0.3.2', version_minor='3', version_minor_patch='3.2', version_patch='2', versionprefix='', versionsuffix='-CUDA-12.6.0'
== 2026-04-14 16:57:43,833 one.py:149 DEBUG Not copying '__builtins__' variable from parsed easyconfig
== 2026-04-14 16:57:43,834 one.py:528 DEBUG Extracted comments:
{'above': {},
 'header': [],
 'inline': {},
 'iterabove': {'exts_list': {'        \'preinstallopts\': "sed -i \'s/<7.0.0//\' requirements.txt && ",': ['# unpin '
                                                                                                           'notebook '
                                                                                                           'and '
                                                                                                           'nbconvert '
                                                                                                           'versions']},
               'local_runtest': {"local_runtest += ' --deselect cellbender/remove_background/tests/test_integration.py::test_full_run[cpu]'": ['# '
                                                                                                                                               'missing '
                                                                                                                                               'ckpt.tar.gz '
                                                                                                                                               'for '
                                                                                                                                               'test_integration.py::test_full_run[cpu]']}},
 'iterinline': {},
 'tail': []}
== 2026-04-14 16:57:43,834 one.py:179 INFO Skipping reformatting value for parameter 'toolchain'
== 2026-04-14 16:57:43,834 easyconfig.py:1388 DEBUG Dumped easyconfig: easyblock = 'PythonBundle'

name = 'CellBender'
version = '0.3.2'
versionsuffix = '-CUDA-%(cudaver)s'

homepage = 'http://github.com/broadinstitute/CellBender'
description = """
CellBender is a software package for eliminating technical artifacts from
high-throughput single-cell RNA sequencing (scRNA-seq) data.
"""

toolchain = {'name': 'foss', 'version': '2024a'}

builddependencies = [
    ('hatchling', '1.24.2', '', ('GCCcore', '13.3.0')),
]
dependencies = [
    ('CUDA', '12.6.0', '', SYSTEM),
    ('Python', '3.12.3', '', ('GCCcore', '13.3.0')),
    ('SciPy-bundle', '2024.05', '', ('gfbf', '2024a')),
    ('PyTorch', '2.7.1', '-CUDA-%(cudaver)s'),
    ('pyro-ppl', '1.9.1', '-CUDA-%(cudaver)s'),
    ('matplotlib', '3.9.2', '', ('gfbf', '2024a')),
    ('IPython', '8.28.0', '', ('GCCcore', '13.3.0')),
    ('anndata', '0.11.4'),
    ('jupyter-contrib-nbextensions', '0.7.0', '', ('GCCcore', '13.3.0')),
    ('loompy', '3.0.8'),
    ('PyTables', '3.10.2'),
    ('Qtconsole', '5.6.0', '', ('GCCcore', '13.3.0')),
    ('scikit-learn', '1.5.2', '', ('gfbf', '2024a')),
]

exts_defaultclass = 'PythonPackage'
exts_filter = (
    'python -c "import %(ext_name)s"',
    '',
)

exts_default_options = {
    'buildcmd': None,
    'check_ldshared': None,
    'click_autocomplete_bins': None,
    'download_dep_fail': None,
    'dummy_package': None,
    'fix_python_shebang_for': ['bin/*'],
    'install_src': None,
    'install_target': 'install',
    'max_py_majver': None,
    'max_py_minver': None,
    'options': {},
    'pip_ignore_installed': True,
    'pip_no_build_isolation': True,
    'pip_no_index': None,
    'pip_verbose': None,
    'req_py_majver': None,
    'req_py_minver': None,
    'runtest': True,
    'sanity_check_pip_list': None,
    'sanity_pip_check': True,
    'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'],
    'testinstall': False,
    'unpack_sources': None,
    'unversioned_packages': [],
    'use_pip': True,
    'use_pip_editable': False,
    'use_pip_extras': None,
    'use_pip_for_deps': False,
    'use_pip_requirement': False,
    'zipped_egg': False,
}

exts_list = [
    ('traitlets', '5.14.3', {'checksums': ['9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7']}),
    ('jupyter_console', '6.6.3', {'checksums': ['566a4bf31c87adbfadf22cdf846e3069b59a71ed5da71d6ba4d8aaad14a53539']}),
    ('jupyter', '1.1.1', {'checksums': ['d55467bceabdea49d7e3624af7e33d59c37fff53ed3a350e1ac957bed731de7a']}),
    ('lxml_html_clean', '0.4.3', {'checksums': ['c9df91925b00f836c807beab127aac82575110eacff54d0a75187914f1bd9d8c']}),
    ('cellbender', '0.3.2', {'preinstallopts': "sed -i 's/<7.0.0//' requirements.txt && ", 'runtest': 'pytest -v cellbender/remove_background/tests/test_dataprep.py cellbender/remove_background/tests/test_downstream.py cellbender/remove_background/tests/test_estimation.py cellbender/remove_background/tests/test_integration.py cellbender/remove_background/tests/test_io.py cellbender/remove_background/tests/test_monitor.py cellbender/remove_background/tests/test_posterior.py cellbender/remove_background/tests/test_sparse_utils.py cellbender/remove_background/tests/test_train.py --deselect cellbender/remove_background/tests/test_integration.py::test_full_run[cpu] --deselect cellbender/remove_background/tests/test_integration.py::test_full_run[cuda]', 'testinstall': True, 'source_urls': ['https://github.com/broadinstitute/%(name)s/archive/'], 'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['3bd4bf77c82a5817bb09ac3db236e9795e3e71c99cbe34c8baef04272a7d1717']}),
]

sanity_check_commands = [
    "%(namelower)s --help",
    "%(namelower)s remove-background --help",
]

moduleclass = 'bio'

== 2026-04-14 16:57:43,835 filetools.py:2059 INFO Creating directory /tmp/eb-73ly5_3c/reprod_20260414165743_847725 (parents: True, set_gid: False, sticky: False)
== 2026-04-14 16:57:43,835 easyblock.py:5414 INFO Dumped easyconfig instance to /tmp/eb-73ly5_3c/reprod_20260414165743_847725/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb
== 2026-04-14 16:57:43,835 filetools.py:2059 INFO Creating directory /tmp/eb-73ly5_3c/reprod_20260414165743_847725/easyblocks (parents: True, set_gid: False, sticky: False)
== 2026-04-14 16:57:43,854 filetools.py:2543 INFO /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/easyblocks/generic/bundle.py copied to /tmp/eb-73ly5_3c/reprod_20260414165743_847725/easyblocks/bundle.py
== 2026-04-14 16:57:43,854 easyblock.py:5394 INFO Dumped easyblock bundle.py required for reproduction to /tmp/eb-73ly5_3c/reprod_20260414165743_847725/easyblocks
== 2026-04-14 16:57:43,854 filetools.py:2084 DEBUG Not creating existing path /tmp/eb-73ly5_3c/reprod_20260414165743_847725/easyblocks
== 2026-04-14 16:57:43,866 filetools.py:2543 INFO /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/easyblocks/generic/pythonbundle.py copied to /tmp/eb-73ly5_3c/reprod_20260414165743_847725/easyblocks/pythonbundle.py
== 2026-04-14 16:57:43,866 easyblock.py:5394 INFO Dumped easyblock pythonbundle.py required for reproduction to /tmp/eb-73ly5_3c/reprod_20260414165743_847725/easyblocks
== 2026-04-14 16:57:43,867 filetools.py:2059 INFO Creating directory /tmp/eb-73ly5_3c/reprod_20260414165743_847725/hooks (parents: True, set_gid: False, sticky: False)
== 2026-04-14 16:57:43,883 filetools.py:2543 INFO /user/gent/461/vsc46128/software-stack/eb_hooks.py copied to /tmp/eb-73ly5_3c/reprod_20260414165743_847725/hooks/eb_hooks.py
== 2026-04-14 16:57:43,883 easyblock.py:5426 INFO Dumped hooks file /user/gent/461/vsc46128/software-stack/eb_hooks.py which is (potentially) required for reproduction to /tmp/eb-73ly5_3c/reprod_20260414165743_847725/hooks/eb_hooks.py
== 2026-04-14 16:57:43,884 easyblock.py:2551 INFO Number of iterations to perform for central part of installation procedure: 1
== 2026-04-14 16:57:43,884 build_log.py:330 INFO building and installing CellBender/0.3.2-foss-2024a-CUDA-12.6.0...
== 2026-04-14 16:57:43,888 config.py:784 DEBUG software install path as specified by 'installpath' and 'subdir_software': /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software
== 2026-04-14 16:57:43,888 filetools.py:2142 INFO Lock /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_CellBender_0.3.2-foss-2024a-CUDA-12.6.0.lock does not exist
== 2026-04-14 16:57:43,888 config.py:784 DEBUG software install path as specified by 'installpath' and 'subdir_software': /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software
== 2026-04-14 16:57:43,888 filetools.py:2099 INFO Creating lock at /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_CellBender_0.3.2-foss-2024a-CUDA-12.6.0.lock...
== 2026-04-14 16:57:43,888 filetools.py:2059 INFO Creating directory /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_CellBender_0.3.2-foss-2024a-CUDA-12.6.0.lock (parents: True, set_gid: False, sticky: False)
== 2026-04-14 16:57:43,888 filetools.py:2108 INFO Lock created: /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_CellBender_0.3.2-foss-2024a-CUDA-12.6.0.lock
== 2026-04-14 16:57:43,888 easyblock.py:2587 INFO Setting parallelism: 12
== 2026-04-14 16:57:43,888 easyblock.py:4794 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False)
== 2026-04-14 16:57:43,888 build_log.py:330 INFO fetching files and verifying checksums...
== 2026-04-14 16:57:43,890 easyblock.py:4803 INFO Starting fetch step
== 2026-04-14 16:57:43,890 easyconfig.py:1829 INFO Generating template values...
== 2026-04-14 16:57:43,890 templates.py:316 DEBUG config: CellBender EasyConfig @ /tmp/eb-73ly5_3c/files_pr25636/c/CellBender/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb
== 2026-04-14 16:57:43,890 templates.py:352 DEBUG version found in easyconfig is 0.3.2
== 2026-04-14 16:57:43,890 templates.py:468 DEBUG name: bitbucket_account, config: %(namelower)s
== 2026-04-14 16:57:43,890 templates.py:468 DEBUG name: github_account, config: %(namelower)s
== 2026-04-14 16:57:43,890 templates.py:468 DEBUG name: name, config: CellBender
== 2026-04-14 16:57:43,890 templates.py:468 DEBUG name: version, config: 0.3.2
== 2026-04-14 16:57:43,890 templates.py:468 DEBUG name: versionsuffix, config: -CUDA-%(cudaver)s
== 2026-04-14 16:57:43,890 templates.py:468 DEBUG name: versionprefix, config: 
== 2026-04-14 16:57:43,890 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2026-04-14 16:57:43,890 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2026-04-14 16:57:43,890 easyconfig.py:1848 INFO Template values: arch='x86_64', bitbucket_account='cellbender', builddir='/tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0', cuda_cc_cmake='90', cuda_cc_nvhpc='cc90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_cc_space_sep_no_period='90', cuda_compute_capabilities='9.0', cuda_int_comma_sep='90', cuda_int_semicolon_sep='90', cuda_int_space_sep='90', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', cudamajver='12', cudaminver='6', cudashortver='12.6', cudaver='12.6.0', github_account='cellbender', installdir='/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/CellBender/0.3.2-foss-2024a-CUDA-12.6.0', module_name='CellBender/0.3.2-foss-2024a-CUDA-12.6.0', mpi_cmd_prefix='mpirun -n 1', name='CellBender', nameletter='C', nameletterlower='c', namelower='cellbender', parallel='12', pymajver='3', pyminver='12', pyshortver='3.12', pyver='3.12.3', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2024a', version='0.3.2', version_major='0', version_major_minor='0.3', version_major_minor_patch='0.3.2', version_minor='3', version_minor_patch='3.2', version_patch='2', versionprefix='', versionsuffix='-CUDA-12.6.0'
== 2026-04-14 16:57:43,891 easyblock.py:4814 INFO Running method fetch_step part of step fetch
== 2026-04-14 16:57:43,891 easyblock.py:2688 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2026-04-14 16:57:43,891 easyblock.py:2718 INFO no sources or data_sources provided
== 2026-04-14 16:57:43,891 easyblock.py:2733 INFO no patches provided
== 2026-04-14 16:57:43,891 templates.py:316 DEBUG config: {'name': 'traitlets', 'version': '5.14.3', 'options': {'buildcmd': None, 'check_ldshared': None, 'click_autocomplete_bins': None, 'download_dep_fail': None, 'dummy_package': None, 'fix_python_shebang_for': ['bin/*'], 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_build_isolation': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': None, 'req_py_minver': None, 'max_py_majver': None, 'max_py_minver': None, 'sanity_pip_check': True, 'sanity_check_pip_list': None, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}, 'checksums': ['9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7']}, 'github_account': 'cellbender', 'easyblock': None}
== 2026-04-14 16:57:43,891 templates.py:352 DEBUG version found in easyconfig is 5.14.3
== 2026-04-14 16:57:43,891 templates.py:468 DEBUG name: github_account, config: cellbender
== 2026-04-14 16:57:43,891 templates.py:468 DEBUG name: name, config: traitlets
== 2026-04-14 16:57:43,891 templates.py:468 DEBUG name: version, config: 5.14.3
== 2026-04-14 16:57:43,891 easyblock.py:960 INFO Considering directory in which easyconfig file is located when searching for traitlets-5.14.3.tar.gz: /tmp/eb-73ly5_3c/files_pr25636/c/CellBender
== 2026-04-14 16:57:43,891 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/bin/eb
== 2026-04-14 16:57:43,891 tools.py:252 INFO Also considering installation prefix /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9 (determined via path to 'eb' script)...
== 2026-04-14 16:57:43,891 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs/easybuild/easyconfigs
== 2026-04-14 16:57:43,891 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-73ly5_3c/files_pr25636/easybuild/easyconfigs
== 2026-04-14 16:57:43,891 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-73ly5_3c/fake_vsc_tlt32iqt/easybuild/easyconfigs
== 2026-04-14 16:57:43,891 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/home/gent/461/vsc46128/easybuild/easyconfigs
== 2026-04-14 16:57:43,892 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python39.zip/easybuild/easyconfigs
== 2026-04-14 16:57:43,892 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/easybuild/easyconfigs
== 2026-04-14 16:57:43,892 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/lib-dynload/easybuild/easyconfigs
== 2026-04-14 16:57:43,892 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/easyconfigs
== 2026-04-14 16:57:43,892 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib/python3.9/site-packages/easybuild/easyconfigs
== 2026-04-14 16:57:43,892 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs
== 2026-04-14 16:57:43,892 tools.py:271 DEBUG Added /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2026-04-14 16:57:43,902 easyblock.py:1002 INFO Found file traitlets-5.14.3.tar.gz at /apps/gent/source/c/CellBender/extensions/traitlets-5.14.3.tar.gz
== 2026-04-14 16:57:43,902 filetools.py:1335 DEBUG Using blocksize 16777216 for calculating the checksum
== 2026-04-14 16:57:43,916 easyblock.py:796 INFO sha256 checksum for /apps/gent/source/c/CellBender/extensions/traitlets-5.14.3.tar.gz: 9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7
== 2026-04-14 16:57:43,916 easyblock.py:799 DEBUG Verifying checksums for extension source...
== 2026-04-14 16:57:43,916 filetools.py:1420 DEBUG Precomputed sha256 checksum for /apps/gent/source/c/CellBender/extensions/traitlets-5.14.3.tar.gz: 9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7 (correct checksum: 9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7)
== 2026-04-14 16:57:43,916 easyblock.py:802 INFO Checksum for extension source traitlets-5.14.3.tar.gz verified
== 2026-04-14 16:57:43,916 easyblock.py:635 INFO Fetched extension patches: []
== 2026-04-14 16:57:43,916 easyblock.py:853 DEBUG No patches found for extension traitlets.
== 2026-04-14 16:57:43,916 templates.py:316 DEBUG config: {'name': 'jupyter_console', 'version': '6.6.3', 'options': {'buildcmd': None, 'check_ldshared': None, 'click_autocomplete_bins': None, 'download_dep_fail': None, 'dummy_package': None, 'fix_python_shebang_for': ['bin/*'], 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_build_isolation': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': None, 'req_py_minver': None, 'max_py_majver': None, 'max_py_minver': None, 'sanity_pip_check': True, 'sanity_check_pip_list': None, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}, 'checksums': ['566a4bf31c87adbfadf22cdf846e3069b59a71ed5da71d6ba4d8aaad14a53539']}, 'github_account': 'cellbender', 'easyblock': None}
== 2026-04-14 16:57:43,916 templates.py:352 DEBUG version found in easyconfig is 6.6.3
== 2026-04-14 16:57:43,916 templates.py:468 DEBUG name: github_account, config: cellbender
== 2026-04-14 16:57:43,916 templates.py:468 DEBUG name: name, config: jupyter_console
== 2026-04-14 16:57:43,916 templates.py:468 DEBUG name: version, config: 6.6.3
== 2026-04-14 16:57:43,916 easyblock.py:960 INFO Considering directory in which easyconfig file is located when searching for jupyter_console-6.6.3.tar.gz: /tmp/eb-73ly5_3c/files_pr25636/c/CellBender
== 2026-04-14 16:57:43,916 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/bin/eb
== 2026-04-14 16:57:43,916 tools.py:252 INFO Also considering installation prefix /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9 (determined via path to 'eb' script)...
== 2026-04-14 16:57:43,916 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs/easybuild/easyconfigs
== 2026-04-14 16:57:43,916 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-73ly5_3c/files_pr25636/easybuild/easyconfigs
== 2026-04-14 16:57:43,916 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-73ly5_3c/fake_vsc_tlt32iqt/easybuild/easyconfigs
== 2026-04-14 16:57:43,917 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/home/gent/461/vsc46128/easybuild/easyconfigs
== 2026-04-14 16:57:43,917 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python39.zip/easybuild/easyconfigs
== 2026-04-14 16:57:43,917 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/easybuild/easyconfigs
== 2026-04-14 16:57:43,917 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/lib-dynload/easybuild/easyconfigs
== 2026-04-14 16:57:43,917 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/easyconfigs
== 2026-04-14 16:57:43,917 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib/python3.9/site-packages/easybuild/easyconfigs
== 2026-04-14 16:57:43,917 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs
== 2026-04-14 16:57:43,917 tools.py:271 DEBUG Added /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2026-04-14 16:57:43,918 easyblock.py:1002 INFO Found file jupyter_console-6.6.3.tar.gz at /apps/gent/source/c/CellBender/extensions/jupyter_console-6.6.3.tar.gz
== 2026-04-14 16:57:43,918 filetools.py:1335 DEBUG Using blocksize 16777216 for calculating the checksum
== 2026-04-14 16:57:43,926 easyblock.py:796 INFO sha256 checksum for /apps/gent/source/c/CellBender/extensions/jupyter_console-6.6.3.tar.gz: 566a4bf31c87adbfadf22cdf846e3069b59a71ed5da71d6ba4d8aaad14a53539
== 2026-04-14 16:57:43,926 easyblock.py:799 DEBUG Verifying checksums for extension source...
== 2026-04-14 16:57:43,926 filetools.py:1420 DEBUG Precomputed sha256 checksum for /apps/gent/source/c/CellBender/extensions/jupyter_console-6.6.3.tar.gz: 566a4bf31c87adbfadf22cdf846e3069b59a71ed5da71d6ba4d8aaad14a53539 (correct checksum: 566a4bf31c87adbfadf22cdf846e3069b59a71ed5da71d6ba4d8aaad14a53539)
== 2026-04-14 16:57:43,926 easyblock.py:802 INFO Checksum for extension source jupyter_console-6.6.3.tar.gz verified
== 2026-04-14 16:57:43,926 easyblock.py:635 INFO Fetched extension patches: []
== 2026-04-14 16:57:43,926 easyblock.py:853 DEBUG No patches found for extension jupyter_console.
== 2026-04-14 16:57:43,926 templates.py:316 DEBUG config: {'name': 'jupyter', 'version': '1.1.1', 'options': {'buildcmd': None, 'check_ldshared': None, 'click_autocomplete_bins': None, 'download_dep_fail': None, 'dummy_package': None, 'fix_python_shebang_for': ['bin/*'], 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_build_isolation': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': None, 'req_py_minver': None, 'max_py_majver': None, 'max_py_minver': None, 'sanity_pip_check': True, 'sanity_check_pip_list': None, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}, 'checksums': ['d55467bceabdea49d7e3624af7e33d59c37fff53ed3a350e1ac957bed731de7a']}, 'github_account': 'cellbender', 'easyblock': None}
== 2026-04-14 16:57:43,926 templates.py:352 DEBUG version found in easyconfig is 1.1.1
== 2026-04-14 16:57:43,926 templates.py:468 DEBUG name: github_account, config: cellbender
== 2026-04-14 16:57:43,926 templates.py:468 DEBUG name: name, config: jupyter
== 2026-04-14 16:57:43,926 templates.py:468 DEBUG name: version, config: 1.1.1
== 2026-04-14 16:57:43,926 easyblock.py:960 INFO Considering directory in which easyconfig file is located when searching for jupyter-1.1.1.tar.gz: /tmp/eb-73ly5_3c/files_pr25636/c/CellBender
== 2026-04-14 16:57:43,926 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/bin/eb
== 2026-04-14 16:57:43,926 tools.py:252 INFO Also considering installation prefix /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9 (determined via path to 'eb' script)...
== 2026-04-14 16:57:43,927 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs/easybuild/easyconfigs
== 2026-04-14 16:57:43,927 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-73ly5_3c/files_pr25636/easybuild/easyconfigs
== 2026-04-14 16:57:43,927 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-73ly5_3c/fake_vsc_tlt32iqt/easybuild/easyconfigs
== 2026-04-14 16:57:43,927 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/home/gent/461/vsc46128/easybuild/easyconfigs
== 2026-04-14 16:57:43,927 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python39.zip/easybuild/easyconfigs
== 2026-04-14 16:57:43,927 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/easybuild/easyconfigs
== 2026-04-14 16:57:43,927 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/lib-dynload/easybuild/easyconfigs
== 2026-04-14 16:57:43,927 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/easyconfigs
== 2026-04-14 16:57:43,927 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib/python3.9/site-packages/easybuild/easyconfigs
== 2026-04-14 16:57:43,927 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs
== 2026-04-14 16:57:43,927 tools.py:271 DEBUG Added /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2026-04-14 16:57:43,930 easyblock.py:1002 INFO Found file jupyter-1.1.1.tar.gz at /apps/gent/source/c/CellBender/extensions/jupyter-1.1.1.tar.gz
== 2026-04-14 16:57:43,930 filetools.py:1335 DEBUG Using blocksize 16777216 for calculating the checksum
== 2026-04-14 16:57:43,973 easyblock.py:796 INFO sha256 checksum for /apps/gent/source/c/CellBender/extensions/jupyter-1.1.1.tar.gz: d55467bceabdea49d7e3624af7e33d59c37fff53ed3a350e1ac957bed731de7a
== 2026-04-14 16:57:43,973 easyblock.py:799 DEBUG Verifying checksums for extension source...
== 2026-04-14 16:57:43,973 filetools.py:1420 DEBUG Precomputed sha256 checksum for /apps/gent/source/c/CellBender/extensions/jupyter-1.1.1.tar.gz: d55467bceabdea49d7e3624af7e33d59c37fff53ed3a350e1ac957bed731de7a (correct checksum: d55467bceabdea49d7e3624af7e33d59c37fff53ed3a350e1ac957bed731de7a)
== 2026-04-14 16:57:43,973 easyblock.py:802 INFO Checksum for extension source jupyter-1.1.1.tar.gz verified
== 2026-04-14 16:57:43,973 easyblock.py:635 INFO Fetched extension patches: []
== 2026-04-14 16:57:43,973 easyblock.py:853 DEBUG No patches found for extension jupyter.
== 2026-04-14 16:57:43,974 templates.py:316 DEBUG config: {'name': 'lxml_html_clean', 'version': '0.4.3', 'options': {'buildcmd': None, 'check_ldshared': None, 'click_autocomplete_bins': None, 'download_dep_fail': None, 'dummy_package': None, 'fix_python_shebang_for': ['bin/*'], 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_build_isolation': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': None, 'req_py_minver': None, 'max_py_majver': None, 'max_py_minver': None, 'sanity_pip_check': True, 'sanity_check_pip_list': None, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}, 'checksums': ['c9df91925b00f836c807beab127aac82575110eacff54d0a75187914f1bd9d8c']}, 'github_account': 'cellbender', 'easyblock': None}
== 2026-04-14 16:57:43,974 templates.py:352 DEBUG version found in easyconfig is 0.4.3
== 2026-04-14 16:57:43,974 templates.py:468 DEBUG name: github_account, config: cellbender
== 2026-04-14 16:57:43,974 templates.py:468 DEBUG name: name, config: lxml_html_clean
== 2026-04-14 16:57:43,974 templates.py:468 DEBUG name: version, config: 0.4.3
== 2026-04-14 16:57:43,974 easyblock.py:960 INFO Considering directory in which easyconfig file is located when searching for lxml_html_clean-0.4.3.tar.gz: /tmp/eb-73ly5_3c/files_pr25636/c/CellBender
== 2026-04-14 16:57:43,974 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/bin/eb
== 2026-04-14 16:57:43,974 tools.py:252 INFO Also considering installation prefix /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9 (determined via path to 'eb' script)...
== 2026-04-14 16:57:43,974 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs/easybuild/easyconfigs
== 2026-04-14 16:57:43,974 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-73ly5_3c/files_pr25636/easybuild/easyconfigs
== 2026-04-14 16:57:43,974 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-73ly5_3c/fake_vsc_tlt32iqt/easybuild/easyconfigs
== 2026-04-14 16:57:43,974 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/home/gent/461/vsc46128/easybuild/easyconfigs
== 2026-04-14 16:57:43,974 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python39.zip/easybuild/easyconfigs
== 2026-04-14 16:57:43,974 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/easybuild/easyconfigs
== 2026-04-14 16:57:43,974 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/lib-dynload/easybuild/easyconfigs
== 2026-04-14 16:57:43,974 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/easyconfigs
== 2026-04-14 16:57:43,974 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib/python3.9/site-packages/easybuild/easyconfigs
== 2026-04-14 16:57:43,974 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs
== 2026-04-14 16:57:43,975 tools.py:271 DEBUG Added /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2026-04-14 16:57:43,975 easyblock.py:1002 INFO Found file lxml_html_clean-0.4.3.tar.gz at /apps/gent/source/c/CellBender/extensions/lxml_html_clean-0.4.3.tar.gz
== 2026-04-14 16:57:43,975 filetools.py:1335 DEBUG Using blocksize 16777216 for calculating the checksum
== 2026-04-14 16:57:44,022 easyblock.py:796 INFO sha256 checksum for /apps/gent/source/c/CellBender/extensions/lxml_html_clean-0.4.3.tar.gz: c9df91925b00f836c807beab127aac82575110eacff54d0a75187914f1bd9d8c
== 2026-04-14 16:57:44,022 easyblock.py:799 DEBUG Verifying checksums for extension source...
== 2026-04-14 16:57:44,022 filetools.py:1420 DEBUG Precomputed sha256 checksum for /apps/gent/source/c/CellBender/extensions/lxml_html_clean-0.4.3.tar.gz: c9df91925b00f836c807beab127aac82575110eacff54d0a75187914f1bd9d8c (correct checksum: c9df91925b00f836c807beab127aac82575110eacff54d0a75187914f1bd9d8c)
== 2026-04-14 16:57:44,022 easyblock.py:802 INFO Checksum for extension source lxml_html_clean-0.4.3.tar.gz verified
== 2026-04-14 16:57:44,022 easyblock.py:635 INFO Fetched extension patches: []
== 2026-04-14 16:57:44,022 easyblock.py:853 DEBUG No patches found for extension lxml_html_clean.
== 2026-04-14 16:57:44,022 templates.py:316 DEBUG config: {'name': 'cellbender', 'version': '0.3.2', 'options': {'buildcmd': None, 'check_ldshared': None, 'click_autocomplete_bins': None, 'download_dep_fail': None, 'dummy_package': None, 'fix_python_shebang_for': ['bin/*'], 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_build_isolation': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': None, 'req_py_minver': None, 'max_py_majver': None, 'max_py_minver': None, 'sanity_pip_check': True, 'sanity_check_pip_list': None, 'runtest': 'pytest -v cellbender/remove_background/tests/test_dataprep.py cellbender/remove_background/tests/test_downstream.py cellbender/remove_background/tests/test_estimation.py cellbender/remove_background/tests/test_integration.py cellbender/remove_background/tests/test_io.py cellbender/remove_background/tests/test_monitor.py cellbender/remove_background/tests/test_posterior.py cellbender/remove_background/tests/test_sparse_utils.py cellbender/remove_background/tests/test_train.py --deselect cellbender/remove_background/tests/test_integration.py::test_full_run[cpu] --deselect cellbender/remove_background/tests/test_integration.py::test_full_run[cuda]', 'testinstall': True, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://github.com/broadinstitute/%(name)s/archive/'], 'options': {}, 'preinstallopts': "sed -i 's/<7.0.0//' requirements.txt && ", 'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['3bd4bf77c82a5817bb09ac3db236e9795e3e71c99cbe34c8baef04272a7d1717']}, 'github_account': 'cellbender', 'easyblock': None}
== 2026-04-14 16:57:44,022 templates.py:352 DEBUG version found in easyconfig is 0.3.2
== 2026-04-14 16:57:44,022 templates.py:468 DEBUG name: github_account, config: cellbender
== 2026-04-14 16:57:44,022 templates.py:468 DEBUG name: name, config: cellbender
== 2026-04-14 16:57:44,022 templates.py:468 DEBUG name: version, config: 0.3.2
== 2026-04-14 16:57:44,023 easyblock.py:960 INFO Considering directory in which easyconfig file is located when searching for cellbender-0.3.2.tar.gz: /tmp/eb-73ly5_3c/files_pr25636/c/CellBender
== 2026-04-14 16:57:44,023 tools.py:238 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/bin/eb
== 2026-04-14 16:57:44,023 tools.py:252 INFO Also considering installation prefix /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9 (determined via path to 'eb' script)...
== 2026-04-14 16:57:44,023 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs/easybuild/easyconfigs
== 2026-04-14 16:57:44,023 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-73ly5_3c/files_pr25636/easybuild/easyconfigs
== 2026-04-14 16:57:44,023 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-73ly5_3c/fake_vsc_tlt32iqt/easybuild/easyconfigs
== 2026-04-14 16:57:44,023 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/home/gent/461/vsc46128/easybuild/easyconfigs
== 2026-04-14 16:57:44,023 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python39.zip/easybuild/easyconfigs
== 2026-04-14 16:57:44,023 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/easybuild/easyconfigs
== 2026-04-14 16:57:44,023 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/lib-dynload/easybuild/easyconfigs
== 2026-04-14 16:57:44,023 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/easyconfigs
== 2026-04-14 16:57:44,023 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/lib/python3.9/site-packages/easybuild/easyconfigs
== 2026-04-14 16:57:44,023 tools.py:267 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs
== 2026-04-14 16:57:44,023 tools.py:271 DEBUG Added /kyukon/data/gent/vo/000/gvo00002/vsc46128/easybuild/eb_job_litleo_RHEL9/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2026-04-14 16:57:44,024 easyblock.py:1002 INFO Found file cellbender-0.3.2.tar.gz at /data/gent/vo/000/gvo00002/vsc46128/easybuild/sources/c/CellBender/extensions/cellbender-0.3.2.tar.gz
== 2026-04-14 16:57:44,024 easyblock.py:548 DEBUG File /data/gent/vo/000/gvo00002/vsc46128/easybuild/sources/c/CellBender/extensions/cellbender-0.3.2.tar.gz found for source cellbender-0.3.2.tar.gz
== 2026-04-14 16:57:44,024 filetools.py:1335 DEBUG Using blocksize 16777216 for calculating the checksum
== 2026-04-14 16:57:44,065 easyblock.py:796 INFO sha256 checksum for /data/gent/vo/000/gvo00002/vsc46128/easybuild/sources/c/CellBender/extensions/cellbender-0.3.2.tar.gz: 3bd4bf77c82a5817bb09ac3db236e9795e3e71c99cbe34c8baef04272a7d1717
== 2026-04-14 16:57:44,066 easyblock.py:799 DEBUG Verifying checksums for extension source...
== 2026-04-14 16:57:44,066 filetools.py:1420 DEBUG Precomputed sha256 checksum for /data/gent/vo/000/gvo00002/vsc46128/easybuild/sources/c/CellBender/extensions/cellbender-0.3.2.tar.gz: 3bd4bf77c82a5817bb09ac3db236e9795e3e71c99cbe34c8baef04272a7d1717 (correct checksum: 3bd4bf77c82a5817bb09ac3db236e9795e3e71c99cbe34c8baef04272a7d1717)
== 2026-04-14 16:57:44,066 easyblock.py:802 INFO Checksum for extension source cellbender-0.3.2.tar.gz verified
== 2026-04-14 16:57:44,066 easyblock.py:635 INFO Fetched extension patches: []
== 2026-04-14 16:57:44,066 easyblock.py:853 DEBUG No patches found for extension cellbender.
== 2026-04-14 16:57:44,066 easyconfig.py:2869 DEBUG Determining full module name for CellBender EasyConfig @ /tmp/eb-73ly5_3c/files_pr25636/c/CellBender/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb (force_visible: False)
== 2026-04-14 16:57:44,066 easyconfig.py:2846 DEBUG No alternative software name specified to determine module name with
== 2026-04-14 16:57:44,066 utilities.py:114 DEBUG Module name CellBender/0.3.2-foss-2024a-CUDA-12.6.0 validated
== 2026-04-14 16:57:44,066 easyconfig.py:2877 DEBUG Obtained valid full module name CellBender/0.3.2-foss-2024a-CUDA-12.6.0
== 2026-04-14 16:57:44,066 config.py:784 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/modules
== 2026-04-14 16:57:44,066 easyblock.py:2777 INFO Checking dirs that need to be created: ['/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/CellBender/0.3.2-foss-2024a-CUDA-12.6.0', '/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/modules/all/CellBender', '/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/modules/bio/CellBender']
== 2026-04-14 16:57:44,066 filetools.py:2084 DEBUG Not creating existing path /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/CellBender/0.3.2-foss-2024a-CUDA-12.6.0
== 2026-04-14 16:57:44,067 filetools.py:2084 DEBUG Not creating existing path /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/modules/all/CellBender
== 2026-04-14 16:57:44,068 filetools.py:2084 DEBUG Not creating existing path /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/modules/bio/CellBender
== 2026-04-14 16:57:44,068 easyblock.py:4814 INFO Running method checksum_step part of step fetch
== 2026-04-14 16:57:44,068 build_log.py:330 INFO ... (took < 1 sec)
== 2026-04-14 16:57:44,070 easyblock.py:4794 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False)
== 2026-04-14 16:57:44,070 build_log.py:330 INFO creating build dir, resetting environment...
== 2026-04-14 16:57:44,071 easyblock.py:4803 INFO Starting ready step
== 2026-04-14 16:57:44,071 easyconfig.py:1829 INFO Generating template values...
== 2026-04-14 16:57:44,071 templates.py:316 DEBUG config: CellBender EasyConfig @ /tmp/eb-73ly5_3c/files_pr25636/c/CellBender/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb
== 2026-04-14 16:57:44,071 templates.py:352 DEBUG version found in easyconfig is 0.3.2
== 2026-04-14 16:57:44,071 templates.py:468 DEBUG name: bitbucket_account, config: %(namelower)s
== 2026-04-14 16:57:44,071 templates.py:468 DEBUG name: github_account, config: %(namelower)s
== 2026-04-14 16:57:44,071 templates.py:468 DEBUG name: name, config: CellBender
== 2026-04-14 16:57:44,071 templates.py:468 DEBUG name: version, config: 0.3.2
== 2026-04-14 16:57:44,071 templates.py:468 DEBUG name: versionsuffix, config: -CUDA-%(cudaver)s
== 2026-04-14 16:57:44,072 templates.py:468 DEBUG name: versionprefix, config: 
== 2026-04-14 16:57:44,072 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2026-04-14 16:57:44,072 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2026-04-14 16:57:44,072 easyconfig.py:1848 INFO Template values: arch='x86_64', bitbucket_account='cellbender', builddir='/tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0', cuda_cc_cmake='90', cuda_cc_nvhpc='cc90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_cc_space_sep_no_period='90', cuda_compute_capabilities='9.0', cuda_int_comma_sep='90', cuda_int_semicolon_sep='90', cuda_int_space_sep='90', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', cudamajver='12', cudaminver='6', cudashortver='12.6', cudaver='12.6.0', github_account='cellbender', installdir='/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/CellBender/0.3.2-foss-2024a-CUDA-12.6.0', module_name='CellBender/0.3.2-foss-2024a-CUDA-12.6.0', mpi_cmd_prefix='mpirun -n 1', name='CellBender', nameletter='C', nameletterlower='c', namelower='cellbender', parallel='12', pymajver='3', pyminver='12', pyshortver='3.12', pyver='3.12.3', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2024a', version='0.3.2', version_major='0', version_major_minor='0.3', version_major_minor_patch='0.3.2', version_minor='3', version_minor_patch='3.2', version_patch='2', versionprefix='', versionsuffix='-CUDA-12.6.0'
== 2026-04-14 16:57:44,072 easyblock.py:4814 INFO Running method check_readiness_step part of step ready
== 2026-04-14 16:57:44,072 modules.py:1257 DEBUG Current MODULEPATH: /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/modules/all:/apps/gent/RHEL9/zen4-hopper-ib/modules/all:/apps/gent/RHEL9/zen4-hopper-ib-bot/modules/all:/apps/gent/RHEL9/zen4-ib-bot/modules/all:/apps/gent/RHEL9/zen4-ib/modules/all:/etc/modulefiles/vsc
== 2026-04-14 16:57:44,072 run.py:526 INFO Running '/usr/share/lmod/lmod/libexec/lmod ...' command in /kyukon/home/gent/461/vsc46128:
	/usr/share/lmod/lmod/libexec/lmod python --terse list
== 2026-04-14 16:57:44,120 run.py:642 INFO '/usr/share/lmod/lmod/libexec/lmod ...' command completed successfully
== 2026-04-14 16:57:44,120 modules.py:1972 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine
== 2026-04-14 16:57:44,120 easyblock.py:2637 WARNING Loaded modules detected: ['env/vsc/litleo', 'env/slurm/litleo', 'env/software/litleo', 'cluster/litleo']
== 2026-04-14 16:57:44,121 easyblock.py:4814 INFO Running method make_builddir part of step ready
== 2026-04-14 16:57:44,121 easyblock.py:1227 DEBUG Creating the build directory /tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0 (cleanup: True)
== 2026-04-14 16:57:44,121 easyblock.py:1306 INFO Found old directory /tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0
== 2026-04-14 16:57:44,121 filetools.py:421 INFO Path /tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0 successfully removed.
== 2026-04-14 16:57:44,121 easyblock.py:1329 INFO Removed old directory /tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0
== 2026-04-14 16:57:44,121 filetools.py:2059 INFO Creating directory /tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0 (parents: True, set_gid: False, sticky: False)
== 2026-04-14 16:57:44,123 easyblock.py:4814 INFO Running method reset_env part of step ready
== 2026-04-14 16:57:44,124 easyblock.py:4814 INFO Running method handle_iterate_opts part of step ready
== 2026-04-14 16:57:44,124 easyconfig.py:1829 INFO Generating template values...
== 2026-04-14 16:57:44,124 templates.py:316 DEBUG config: CellBender EasyConfig @ /tmp/eb-73ly5_3c/files_pr25636/c/CellBender/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb
== 2026-04-14 16:57:44,124 templates.py:352 DEBUG version found in easyconfig is 0.3.2
== 2026-04-14 16:57:44,124 templates.py:468 DEBUG name: bitbucket_account, config: %(namelower)s
== 2026-04-14 16:57:44,124 templates.py:468 DEBUG name: github_account, config: %(namelower)s
== 2026-04-14 16:57:44,124 templates.py:468 DEBUG name: name, config: CellBender
== 2026-04-14 16:57:44,124 templates.py:468 DEBUG name: version, config: 0.3.2
== 2026-04-14 16:57:44,124 templates.py:468 DEBUG name: versionsuffix, config: -CUDA-%(cudaver)s
== 2026-04-14 16:57:44,124 templates.py:468 DEBUG name: versionprefix, config: 
== 2026-04-14 16:57:44,124 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2026-04-14 16:57:44,124 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2026-04-14 16:57:44,124 easyconfig.py:1848 INFO Template values: arch='x86_64', bitbucket_account='cellbender', builddir='/tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0', cuda_cc_cmake='90', cuda_cc_nvhpc='cc90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_cc_space_sep_no_period='90', cuda_compute_capabilities='9.0', cuda_int_comma_sep='90', cuda_int_semicolon_sep='90', cuda_int_space_sep='90', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', cudamajver='12', cudaminver='6', cudashortver='12.6', cudaver='12.6.0', github_account='cellbender', installdir='/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/CellBender/0.3.2-foss-2024a-CUDA-12.6.0', module_name='CellBender/0.3.2-foss-2024a-CUDA-12.6.0', mpi_cmd_prefix='mpirun -n 1', name='CellBender', nameletter='C', nameletterlower='c', namelower='cellbender', parallel='12', pymajver='3', pyminver='12', pyshortver='3.12', pyver='3.12.3', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2024a', version='0.3.2', version_major='0', version_major_minor='0.3', version_major_minor_patch='0.3.2', version_minor='3', version_minor_patch='3.2', version_patch='2', versionprefix='', versionsuffix='-CUDA-12.6.0'
== 2026-04-14 16:57:44,124 hooks.py:220 INFO Found post_ready_hook hook
== 2026-04-14 16:57:44,126 hooks.py:251 INFO Running 'post_ready_hook' hook function (args: [<easybuild.easyblocks.generic.pythonbundle.PythonBundle object at 0x14c32d3e8bb0>], keyword args: {})...
== 2026-04-14 16:57:44,126 build_log.py:330 INFO ... (took < 1 sec)
== 2026-04-14 16:57:44,127 easyblock.py:4794 DEBUG Not skipping extract step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False)
== 2026-04-14 16:57:44,128 build_log.py:330 INFO unpacking...
== 2026-04-14 16:57:44,129 easyblock.py:4803 INFO Starting extract step
== 2026-04-14 16:57:44,129 easyconfig.py:1829 INFO Generating template values...
== 2026-04-14 16:57:44,129 templates.py:316 DEBUG config: CellBender EasyConfig @ /tmp/eb-73ly5_3c/files_pr25636/c/CellBender/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb
== 2026-04-14 16:57:44,129 templates.py:352 DEBUG version found in easyconfig is 0.3.2
== 2026-04-14 16:57:44,129 templates.py:468 DEBUG name: bitbucket_account, config: %(namelower)s
== 2026-04-14 16:57:44,129 templates.py:468 DEBUG name: github_account, config: %(namelower)s
== 2026-04-14 16:57:44,129 templates.py:468 DEBUG name: name, config: CellBender
== 2026-04-14 16:57:44,129 templates.py:468 DEBUG name: version, config: 0.3.2
== 2026-04-14 16:57:44,129 templates.py:468 DEBUG name: versionsuffix, config: -CUDA-%(cudaver)s
== 2026-04-14 16:57:44,129 templates.py:468 DEBUG name: versionprefix, config: 
== 2026-04-14 16:57:44,129 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2026-04-14 16:57:44,129 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2026-04-14 16:57:44,130 easyconfig.py:1848 INFO Template values: arch='x86_64', bitbucket_account='cellbender', builddir='/tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0', cuda_cc_cmake='90', cuda_cc_nvhpc='cc90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_cc_space_sep_no_period='90', cuda_compute_capabilities='9.0', cuda_int_comma_sep='90', cuda_int_semicolon_sep='90', cuda_int_space_sep='90', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', cudamajver='12', cudaminver='6', cudashortver='12.6', cudaver='12.6.0', github_account='cellbender', installdir='/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/CellBender/0.3.2-foss-2024a-CUDA-12.6.0', module_name='CellBender/0.3.2-foss-2024a-CUDA-12.6.0', mpi_cmd_prefix='mpirun -n 1', name='CellBender', nameletter='C', nameletterlower='c', namelower='cellbender', parallel='12', pymajver='3', pyminver='12', pyshortver='3.12', pyver='3.12.3', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2024a', version='0.3.2', version_major='0', version_major_minor='0.3', version_major_minor_patch='0.3.2', version_minor='3', version_minor_patch='3.2', version_patch='2', versionprefix='', versionsuffix='-CUDA-12.6.0'
== 2026-04-14 16:57:44,130 easyblock.py:4814 INFO Running method extract_step part of step extract
== 2026-04-14 16:57:44,130 build_log.py:330 INFO ... (took < 1 sec)
== 2026-04-14 16:57:44,131 easyblock.py:4794 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False)
== 2026-04-14 16:57:44,131 build_log.py:330 INFO patching...
== 2026-04-14 16:57:44,133 easyblock.py:4803 INFO Starting patch step
== 2026-04-14 16:57:44,133 easyconfig.py:1829 INFO Generating template values...
== 2026-04-14 16:57:44,133 templates.py:316 DEBUG config: CellBender EasyConfig @ /tmp/eb-73ly5_3c/files_pr25636/c/CellBender/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb
== 2026-04-14 16:57:44,133 templates.py:352 DEBUG version found in easyconfig is 0.3.2
== 2026-04-14 16:57:44,133 templates.py:468 DEBUG name: bitbucket_account, config: %(namelower)s
== 2026-04-14 16:57:44,133 templates.py:468 DEBUG name: github_account, config: %(namelower)s
== 2026-04-14 16:57:44,133 templates.py:468 DEBUG name: name, config: CellBender
== 2026-04-14 16:57:44,133 templates.py:468 DEBUG name: version, config: 0.3.2
== 2026-04-14 16:57:44,133 templates.py:468 DEBUG name: versionsuffix, config: -CUDA-%(cudaver)s
== 2026-04-14 16:57:44,133 templates.py:468 DEBUG name: versionprefix, config: 
== 2026-04-14 16:57:44,133 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2026-04-14 16:57:44,133 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2026-04-14 16:57:44,133 easyconfig.py:1848 INFO Template values: arch='x86_64', bitbucket_account='cellbender', builddir='/tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0', cuda_cc_cmake='90', cuda_cc_nvhpc='cc90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_cc_space_sep_no_period='90', cuda_compute_capabilities='9.0', cuda_int_comma_sep='90', cuda_int_semicolon_sep='90', cuda_int_space_sep='90', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', cudamajver='12', cudaminver='6', cudashortver='12.6', cudaver='12.6.0', github_account='cellbender', installdir='/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/CellBender/0.3.2-foss-2024a-CUDA-12.6.0', module_name='CellBender/0.3.2-foss-2024a-CUDA-12.6.0', mpi_cmd_prefix='mpirun -n 1', name='CellBender', nameletter='C', nameletterlower='c', namelower='cellbender', parallel='12', pymajver='3', pyminver='12', pyshortver='3.12', pyver='3.12.3', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2024a', version='0.3.2', version_major='0', version_major_minor='0.3', version_major_minor_patch='0.3.2', version_minor='3', version_minor_patch='3.2', version_patch='2', versionprefix='', versionsuffix='-CUDA-12.6.0'
== 2026-04-14 16:57:44,133 easyblock.py:4814 INFO Running method patch_step part of step patch
== 2026-04-14 16:57:44,133 build_log.py:330 INFO ... (took < 1 sec)
== 2026-04-14 16:57:44,135 easyblock.py:4794 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False)
== 2026-04-14 16:57:44,135 build_log.py:330 INFO preparing...
== 2026-04-14 16:57:44,136 easyblock.py:4803 INFO Starting prepare step
== 2026-04-14 16:57:44,136 easyconfig.py:1829 INFO Generating template values...
== 2026-04-14 16:57:44,136 templates.py:316 DEBUG config: CellBender EasyConfig @ /tmp/eb-73ly5_3c/files_pr25636/c/CellBender/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb
== 2026-04-14 16:57:44,136 templates.py:352 DEBUG version found in easyconfig is 0.3.2
== 2026-04-14 16:57:44,136 templates.py:468 DEBUG name: bitbucket_account, config: %(namelower)s
== 2026-04-14 16:57:44,136 templates.py:468 DEBUG name: github_account, config: %(namelower)s
== 2026-04-14 16:57:44,136 templates.py:468 DEBUG name: name, config: CellBender
== 2026-04-14 16:57:44,137 templates.py:468 DEBUG name: version, config: 0.3.2
== 2026-04-14 16:57:44,137 templates.py:468 DEBUG name: versionsuffix, config: -CUDA-%(cudaver)s
== 2026-04-14 16:57:44,137 templates.py:468 DEBUG name: versionprefix, config: 
== 2026-04-14 16:57:44,137 mpi.py:123 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2026-04-14 16:57:44,137 mpi.py:299 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2026-04-14 16:57:44,137 easyconfig.py:1848 INFO Template values: arch='x86_64', bitbucket_account='cellbender', builddir='/tmp/CellBender/0.3.2/foss-2024a-CUDA-12.6.0', cuda_cc_cmake='90', cuda_cc_nvhpc='cc90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_cc_space_sep_no_period='90', cuda_compute_capabilities='9.0', cuda_int_comma_sep='90', cuda_int_semicolon_sep='90', cuda_int_space_sep='90', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', cudamajver='12', cudaminver='6', cudashortver='12.6', cudaver='12.6.0', github_account='cellbender', installdir='/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/CellBender/0.3.2-foss-2024a-CUDA-12.6.0', module_name='CellBender/0.3.2-foss-2024a-CUDA-12.6.0', mpi_cmd_prefix='mpirun -n 1', name='CellBender', nameletter='C', nameletterlower='c', namelower='cellbender', parallel='12', pymajver='3', pyminver='12', pyshortver='3.12', pyver='3.12.3', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2024a', version='0.3.2', version_major='0', version_major_minor='0.3', version_major_minor_patch='0.3.2', version_minor='3', version_minor_patch='3.2', version_patch='2', versionprefix='', versionsuffix='-CUDA-12.6.0'
== 2026-04-14 16:57:44,137 easyblock.py:4814 INFO Running method prepare_step part of step prepare
== 2026-04-14 16:57:44,137 easyconfig.py:2937 DEBUG Determining initial module paths for CellBender EasyConfig @ /tmp/eb-73ly5_3c/files_pr25636/c/CellBender/CellBender-0.3.2-foss-2024a-CUDA-12.6.0.eb
== 2026-04-14 16:57:44,137 easyconfig.py:2939 DEBUG Obtained initial module paths: []
== 2026-04-14 16:57:44,137 easyconfig.py:1230 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'hatchling/1.24.2-GCCcore-13.3.0', 'short_mod_name': 'hatchling/1.24.2-GCCcore-13.3.0', 'name': 'hatchling', 'version': '1.24.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'CUDA/12.6.0', 'short_mod_name': 'CUDA/12.6.0', 'name': 'CUDA', 'version': '12.6.0', 'versionsuffix': '', 'toolchain': {'name': 'system', 'version': 'system'}, 'toolchain_inherited': False, 'system': True, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.12.3-GCCcore-13.3.0', 'short_mod_name': 'Python/3.12.3-GCCcore-13.3.0', 'name': 'Python', 'version': '3.12.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'SciPy-bundle/2024.05-gfbf-2024a', 'short_mod_name': 'SciPy-bundle/2024.05-gfbf-2024a', 'name': 'SciPy-bundle', 'version': '2024.05', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyTorch/2.7.1-foss-2024a-CUDA-12.6.0', 'short_mod_name': 'PyTorch/2.7.1-foss-2024a-CUDA-12.6.0', 'name': 'PyTorch', 'version': '2.7.1', 'versionsuffix': '-CUDA-12.6.0', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'pyro-ppl/1.9.1-foss-2024a-CUDA-12.6.0', 'short_mod_name': 'pyro-ppl/1.9.1-foss-2024a-CUDA-12.6.0', 'name': 'pyro-ppl', 'version': '1.9.1', 'versionsuffix': '-CUDA-12.6.0', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'matplotlib/3.9.2-gfbf-2024a', 'short_mod_name': 'matplotlib/3.9.2-gfbf-2024a', 'name': 'matplotlib', 'version': '3.9.2', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'IPython/8.28.0-GCCcore-13.3.0', 'short_mod_name': 'IPython/8.28.0-GCCcore-13.3.0', 'name': 'IPython', 'version': '8.28.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'anndata/0.11.4-foss-2024a', 'short_mod_name': 'anndata/0.11.4-foss-2024a', 'name': 'anndata', 'version': '0.11.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'jupyter-contrib-nbextensions/0.7.0-GCCcore-13.3.0', 'short_mod_name': 'jupyter-contrib-nbextensions/0.7.0-GCCcore-13.3.0', 'name': 'jupyter-contrib-nbextensions', 'version': '0.7.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'loompy/3.0.8-foss-2024a', 'short_mod_name': 'loompy/3.0.8-foss-2024a', 'name': 'loompy', 'version': '3.0.8', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyTables/3.10.2-foss-2024a', 'short_mod_name': 'PyTables/3.10.2-foss-2024a', 'name': 'PyTables', 'version': '3.10.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Qtconsole/5.6.0-GCCcore-13.3.0', 'short_mod_name': 'Qtconsole/5.6.0-GCCcore-13.3.0', 'name': 'Qtconsole', 'version': '5.6.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'scikit-learn/1.5.2-gfbf-2024a', 'short_mod_name': 'scikit-learn/1.5.2-gfbf-2024a', 'name': 'scikit-learn', 'version': '1.5.2', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}]
== 2026-04-14 16:57:44,137 easyconfig.py:1233 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'hatchling/1.24.2-GCCcore-13.3.0', 'short_mod_name': 'hatchling/1.24.2-GCCcore-13.3.0', 'name': 'hatchling', 'version': '1.24.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'CUDA/12.6.0', 'short_mod_name': 'CUDA/12.6.0', 'name': 'CUDA', 'version': '12.6.0', 'versionsuffix': '', 'toolchain': {'name': 'system', 'version': 'system'}, 'toolchain_inherited': False, 'system': True, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.12.3-GCCcore-13.3.0', 'short_mod_name': 'Python/3.12.3-GCCcore-13.3.0', 'name': 'Python', 'version': '3.12.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'SciPy-bundle/2024.05-gfbf-2024a', 'short_mod_name': 'SciPy-bundle/2024.05-gfbf-2024a', 'name': 'SciPy-bundle', 'version': '2024.05', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyTorch/2.7.1-foss-2024a-CUDA-12.6.0', 'short_mod_name': 'PyTorch/2.7.1-foss-2024a-CUDA-12.6.0', 'name': 'PyTorch', 'version': '2.7.1', 'versionsuffix': '-CUDA-12.6.0', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'pyro-ppl/1.9.1-foss-2024a-CUDA-12.6.0', 'short_mod_name': 'pyro-ppl/1.9.1-foss-2024a-CUDA-12.6.0', 'name': 'pyro-ppl', 'version': '1.9.1', 'versionsuffix': '-CUDA-12.6.0', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'matplotlib/3.9.2-gfbf-2024a', 'short_mod_name': 'matplotlib/3.9.2-gfbf-2024a', 'name': 'matplotlib', 'version': '3.9.2', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'IPython/8.28.0-GCCcore-13.3.0', 'short_mod_name': 'IPython/8.28.0-GCCcore-13.3.0', 'name': 'IPython', 'version': '8.28.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'anndata/0.11.4-foss-2024a', 'short_mod_name': 'anndata/0.11.4-foss-2024a', 'name': 'anndata', 'version': '0.11.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'jupyter-contrib-nbextensions/0.7.0-GCCcore-13.3.0', 'short_mod_name': 'jupyter-contrib-nbextensions/0.7.0-GCCcore-13.3.0', 'name': 'jupyter-contrib-nbextensions', 'version': '0.7.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'loompy/3.0.8-foss-2024a', 'short_mod_name': 'loompy/3.0.8-foss-2024a', 'name': 'loompy', 'version': '3.0.8', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyTables/3.10.2-foss-2024a', 'short_mod_name': 'PyTables/3.10.2-foss-2024a', 'name': 'PyTables', 'version': '3.10.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Qtconsole/5.6.0-GCCcore-13.3.0', 'short_mod_name': 'Qtconsole/5.6.0-GCCcore-13.3.0', 'name': 'Qtconsole', 'version': '5.6.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'scikit-learn/1.5.2-gfbf-2024a', 'short_mod_name': 'scikit-learn/1.5.2-gfbf-2024a', 'name': 'scikit-learn', 'version': '1.5.2', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}]
== 2026-04-14 16:57:44,138 toolchain.py:567 DEBUG _check_dependencies: adding toolchain dependencies [{'full_mod_name': 'hatchling/1.24.2-GCCcore-13.3.0', 'short_mod_name': 'hatchling/1.24.2-GCCcore-13.3.0', 'name': 'hatchling', 'version': '1.24.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'CUDA/12.6.0', 'short_mod_name': 'CUDA/12.6.0', 'name': 'CUDA', 'version': '12.6.0', 'versionsuffix': '', 'toolchain': {'name': 'system', 'version': 'system'}, 'toolchain_inherited': False, 'system': True, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.12.3-GCCcore-13.3.0', 'short_mod_name': 'Python/3.12.3-GCCcore-13.3.0', 'name': 'Python', 'version': '3.12.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'SciPy-bundle/2024.05-gfbf-2024a', 'short_mod_name': 'SciPy-bundle/2024.05-gfbf-2024a', 'name': 'SciPy-bundle', 'version': '2024.05', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyTorch/2.7.1-foss-2024a-CUDA-12.6.0', 'short_mod_name': 'PyTorch/2.7.1-foss-2024a-CUDA-12.6.0', 'name': 'PyTorch', 'version': '2.7.1', 'versionsuffix': '-CUDA-12.6.0', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'pyro-ppl/1.9.1-foss-2024a-CUDA-12.6.0', 'short_mod_name': 'pyro-ppl/1.9.1-foss-2024a-CUDA-12.6.0', 'name': 'pyro-ppl', 'version': '1.9.1', 'versionsuffix': '-CUDA-12.6.0', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'matplotlib/3.9.2-gfbf-2024a', 'short_mod_name': 'matplotlib/3.9.2-gfbf-2024a', 'name': 'matplotlib', 'version': '3.9.2', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'IPython/8.28.0-GCCcore-13.3.0', 'short_mod_name': 'IPython/8.28.0-GCCcore-13.3.0', 'name': 'IPython', 'version': '8.28.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'anndata/0.11.4-foss-2024a', 'short_mod_name': 'anndata/0.11.4-foss-2024a', 'name': 'anndata', 'version': '0.11.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'jupyter-contrib-nbextensions/0.7.0-GCCcore-13.3.0', 'short_mod_name': 'jupyter-contrib-nbextensions/0.7.0-GCCcore-13.3.0', 'name': 'jupyter-contrib-nbextensions', 'version': '0.7.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'loompy/3.0.8-foss-2024a', 'short_mod_name': 'loompy/3.0.8-foss-2024a', 'name': 'loompy', 'version': '3.0.8', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyTables/3.10.2-foss-2024a', 'short_mod_name': 'PyTables/3.10.2-foss-2024a', 'name': 'PyTables', 'version': '3.10.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Qtconsole/5.6.0-GCCcore-13.3.0', 'short_mod_name': 'Qtconsole/5.6.0-GCCcore-13.3.0', 'name': 'Qtconsole', 'version': '5.6.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'scikit-learn/1.5.2-gfbf-2024a', 'short_mod_name': 'scikit-learn/1.5.2-gfbf-2024a', 'name': 'scikit-learn', 'version': '1.5.2', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2024a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}]
== 2026-04-14 16:57:44,138 toolchain.py:577 DEBUG _check_dependencies: MODULEPATH: /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/modules/all:/apps/gent/RHEL9/zen4-hopper-ib/modules/all:/apps/gent/RHEL9/zen4-hopper-ib-bot/modules/all:/apps/gent/RHEL9/zen4-ib-bot/modules/all:/apps/gent/RHEL9/zen4-ib/modules/all:/etc/modulefiles/vsc
== 2026-04-14 16:57:44,138 modules.py:921 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/modules/all:/apps/gent/RHEL9/zen4-hopper-ib/modules/all:/apps/gent/RHEL9/zen4-hopper-ib-bot/modules/all:/apps/gent/RHEL9/zen4-ib-bot/modules/all:/apps/gent/RHEL9/zen4-ib/modules/all:/etc/modulefiles/vsc', 'lmod', '--show-hidden')': ['4ti2/1.6.10-GCC-13.2.0', 'ABAQUS/2022', 'ABAQUS/2022-hotfix-2214', 'ABAQUS/2023', 'ABAQUS/2024-hotfix-2405', 'ABAQUS/2025', 'ABRicate/1.0.0-gompi-2023a', 'ABRicate/1.0.0-gompi-2023b', 'ABySS/2.3.7-foss-2023a', 'ACTC/1.1-GCCcore-12.3.0', 'AGAT/1.4.0-GCC-12.3.0', 'AMICA/2024.1.19-intel-2023a', 'AMOS/3.1.0-foss-2023a', 'AMRFinderPlus/3.12.8-gompi-2023a', 'ANTLR/2.7.7-GCCcore-12.3.0-Java-11', 'AOCL-BLAS/5.0-GCC-14.2.0', 'AOCL-BLAS/5.1-GCC-14.3.0', 'ASE/3.22.1-gfbf-2023a', 'ASE/3.22.1-iimkl-2023a', 'ASE/3.23.0-gfbf-2023a', 'ASE/3.23.0-gfbf-2023b', 'ASE/3.23.0-gfbf-2024a', 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== 2026-04-14 16:57:44,140 modules.py:1054 INFO Checking whether hatchling/1.24.2-GCCcore-13.3.0 exists...
== 2026-04-14 16:57:44,140 modules.py:1059 INFO Module hatchling/1.24.2-GCCcore-13.3.0 exists (found in list of available modules)
== 2026-04-14 16:57:44,140 modules.py:1082 INFO Result for existence check of hatchling/1.24.2-GCCcore-13.3.0 module: True
== 2026-04-14 16:57:44,140 modules.py:1054 INFO Checking whether CUDA/12.6.0 exists...
== 2026-04-14 16:57:44,140 modules.py:1059 INFO Module CUDA/12.6.0 exists (found in list of available modules)
== 2026-04-14 16:57:44,140 modules.py:1082 INFO Result for existence check of CUDA/12.6.0 module: True
== 2026-04-14 16:57:44,140 modules.py:1054 INFO Checking whether Python/3.12.3-GCCcore-13.3.0 exists...
== 2026-04-14 16:57:44,140 modules.py:1059 INFO Module Python/3.12.3-GCCcore-13.3.0 exists (found in list of available modules)
== 2026-04-14 16:57:44,140 modules.py:1082 INFO Result for existence check of Python/3.12.3-GCCcore-13.3.0 module: True
== 2026-04-14 16:57:44,140 modules.py:1054 INFO Checking whether SciPy-bundle/2024.05-gfbf-2024a exists...
== 2026-04-14 16:57:44,140 modules.py:1059 INFO Module SciPy-bundle/2024.05-gfbf-2024a exists (found in list of available modules)
== 2026-04-14 16:57:44,140 modules.py:1082 INFO Result for existence check of SciPy-bundle/2024.05-gfbf-2024a module: True
== 2026-04-14 16:57:44,140 modules.py:1054 INFO Checking whether PyTorch/2.7.1-foss-2024a-CUDA-12.6.0 exists...
== 2026-04-14 16:57:44,140 modules.py:1059 INFO Module PyTorch/2.7.1-foss-2024a-CUDA-12.6.0 exists (found in list of available modules)
== 2026-04-14 16:57:44,140 modules.py:1082 INFO Result for existence check of PyTorch/2.7.1-foss-2024a-CUDA-12.6.0 module: True
== 2026-04-14 16:57:44,140 modules.py:1054 INFO Checking whether pyro-ppl/1.9.1-foss-2024a-CUDA-12.6.0 exists...
== 2026-04-14 16:57:44,140 modules.py:1059 INFO Module pyro-ppl/1.9.1-foss-2024a-CUDA-12.6.0 exists (found in list of available modules)
== 2026-04-14 16:57:44,140 modules.py:1082 INFO Result for existence check of pyro-ppl/1.9.1-foss-2024a-CUDA-12.6.0 module: True
== 2026-04-14 16:57:44,140 modules.py:1054 INFO Checking whether matplotlib/3.9.2-gfbf-2024a exists...
== 2026-04-14 16:57:44,140 modules.py:1059 INFO Module matplotlib/3.9.2-gfbf-2024a exists (found in list of available modules)
== 2026-04-14 16:57:44,140 modules.py:1082 INFO Result for existence check of matplotlib/3.9.2-gfbf-2024a module: True
== 2026-04-14 16:57:44,141 modules.py:1054 INFO Checking whether IPython/8.28.0-GCCcore-13.3.0 exists...
== 2026-04-14 16:57:44,141 modules.py:1059 INFO Module IPython/8.28.0-GCCcore-13.3.0 exists (found in list of available modules)
== 2026-04-14 16:57:44,141 modules.py:1082 INFO Result for existence check of IPython/8.28.0-GCCcore-13.3.0 module: True
== 2026-04-14 16:57:44,141 modules.py:1054 INFO Checking whether anndata/0.11.4-foss-2024a exists...
== 2026-04-14 16:57:44,141 modules.py:1059 INFO Module anndata/0.11.4-foss-2024a exists (found in list of available modules)
== 2026-04-14 16:57:44,141 modules.py:1082 INFO Result for existence check of anndata/0.11.4-foss-2024a module: True
== 2026-04-14 16:57:44,141 modules.py:1054 INFO Checking whether jupyter-contrib-nbextensions/0.7.0-GCCcore-13.3.0 exists...
== 2026-04-14 16:57:44,141 modules.py:1059 INFO Module jupyter-contrib-nbextensions/0.7.0-GCCcore-13.3.0 exists (found in list of available modules)
== 2026-04-14 16:57:44,141 modules.py:1082 INFO Result for existence check of jupyter-contrib-nbextensions/0.7.0-GCCcore-13.3.0 module: True
== 2026-04-14 16:57:44,141 modules.py:1054 INFO Checking whether loompy/3.0.8-foss-2024a exists...
== 2026-04-14 16:57:44,141 modules.py:1059 INFO Module loompy/3.0.8-foss-2024a exists (found in list of available modules)
== 2026-04-14 16:57:44,141 modules.py:1082 INFO Result for existence check of loompy/3.0.8-foss-2024a module: True
== 2026-04-14 16:57:44,141 modules.py:1054 INFO Checking whether PyTables/3.10.2-foss-2024a exists...
== 2026-04-14 16:57:44,141 modules.py:1059 INFO Module PyTables/3.10.2-foss-2024a exists (found in list of available modules)
== 2026-04-14 16:57:44,141 modules.py:1082 INFO Result for existence check of PyTables/3.10.2-foss-2024a module: True
== 2026-04-14 16:57:44,141 modules.py:1054 INFO Checking whether Qtconsole/5.6.0-GCCcore-13.3.0 exists...
== 2026-04-14 16:57:44,141 modules.py:1061 INFO Module Qtconsole/5.6.0-GCCcore-13.3.0 not found in list of available modules, checking via 'module show'...
== 2026-04-14 16:57:44,141 modules.py:997 DEBUG Checking whether Qtconsole/5.6.0-GCCcore-13.3.0 exists based on output of 'module show'
== 2026-04-14 16:57:44,141 modules.py:1161 DEBUG Found cached result for 'module show Qtconsole/5.6.0-GCCcore-13.3.0' with key '('MODULEPATH=/data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/modules/all:/apps/gent/RHEL9/zen4-hopper-ib/modules/all:/apps/gent/RHEL9/zen4-hopper-ib-bot/modules/all:/apps/gent/RHEL9/zen4-ib-bot/modules/all:/apps/gent/RHEL9/zen4-ib/modules/all:/etc/modulefiles/vsc', 'lmod', 'Qtconsole/5.6.0-GCCcore-13.3.0')': 
== 2026-04-14 16:57:44,141 modules.py:1007 DEBUG Checking line '' to determine whether Qtconsole/5.6.0-GCCcore-13.3.0 exists...
== 2026-04-14 16:57:44,141 modules.py:1011 DEBUG Treating line '' as whitespace, so skipping it
== 2026-04-14 16:57:44,141 modules.py:1075 INFO Module Qtconsole/5.6.0-GCCcore-13.3.0 not found via module avail/show, checking whether it is a wrapper
== 2026-04-14 16:57:44,142 modules.py:1082 INFO Result for existence check of Qtconsole/5.6.0-GCCcore-13.3.0 module: False
== 2026-04-14 16:57:44,142 modules.py:1054 INFO Checking whether scikit-learn/1.5.2-gfbf-2024a exists...
== 2026-04-14 16:57:44,142 modules.py:1059 INFO Module scikit-learn/1.5.2-gfbf-2024a exists (found in list of available modules)
== 2026-04-14 16:57:44,142 modules.py:1082 INFO Result for existence check of scikit-learn/1.5.2-gfbf-2024a module: True
== 2026-04-14 16:57:44,180 build_log.py:233 ERROR EasyBuild encountered an error: Missing modules for dependencies (use --robot?): Qtconsole/5.6.0-GCCcore-13.3.0 (at easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/tools/toolchain/toolchain.py:603 in _check_dependencies)
Callstack:
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/tools/toolchain/toolchain.py:603 in _check_dependencies
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/tools/toolchain/toolchain.py:901 in prepare
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/toolchains/mpi/openmpi.py:78 in prepare
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/framework/easyblock.py:3054 in prepare_step
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/easyblocks/generic/bundle.py:282 in prepare_step
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/easyblocks/generic/pythonbundle.py:110 in prepare_step
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/framework/easyblock.py:4830 in run_step
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/framework/easyblock.py:4989 in run_all_steps
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/framework/easyblock.py:5177 in build_and_install_one
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/main.py:184 in build_and_install_software
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/main.py:630 in process_eb_args
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/main.py:814 in main
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/main.py:872 in main_with_hooks
	easybuild/eb_job_litleo_RHEL9/lib64/python3.9/site-packages/easybuild/main.py:891 in <module>
== 2026-04-14 16:57:44,180 build_log.py:330 INFO ... (took < 1 sec)
== 2026-04-14 16:57:44,182 config.py:784 DEBUG software install path as specified by 'installpath' and 'subdir_software': /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software
== 2026-04-14 16:57:44,182 filetools.py:2150 INFO Removing lock /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_CellBender_0.3.2-foss-2024a-CUDA-12.6.0.lock...
== 2026-04-14 16:57:44,182 filetools.py:421 INFO Path /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_CellBender_0.3.2-foss-2024a-CUDA-12.6.0.lock successfully removed.
== 2026-04-14 16:57:44,182 filetools.py:2154 INFO Lock removed: /data/gent/vo/000/gvo00002/vsc46128/easybuild/RHEL9/zen4-hopper-ib/software/.locks/_data_gent_vo_000_gvo00002_vsc46128_easybuild_RHEL9_zen4-hopper-ib_software_CellBender_0.3.2-foss-2024a-CUDA-12.6.0.lock
== 2026-04-14 16:57:44,182 easyblock.py:400 INFO Closing log for application name CellBender version 0.3.2