MagicGUI

magic.ipynb

magic.py

from magicgui import widgets, use_app
import numpy as np
import re
import mne
from matplotlib.figure import Figure
import pyvista
import pyvista.plotting

# native stuff
backend = mne.viz.get_3d_backend()
assert backend in ("pyvistaqt", "notebook"), backend

if backend == "notebook":
    use_app("ipynb")

columns = [widgets.Container(layout="vertical", labels=False) for _ in range(2)]
columns[0].extend([
    widgets.Label(value="Time"),
    widgets.FloatSlider(min=-0.2, max=0.5, value=0.1, step=0.01),
    widgets.ComboBox(choices=["lateral", "medial"]),
    widgets.Label(value="fmin/fmid/fmax"),
    widgets.FloatSlider(min=1, max=3, value=1, step=0.01),
    widgets.FloatSlider(min=1, max=3, value=2, step=0.01),
    widgets.FloatSlider(min=1, max=3, value=3, step=0.01),
    widgets.Container(
        widgets=[
            widgets.PushButton(text="↺"),
            widgets.PushButton(text="+"),
            widgets.PushButton(text="-"),
        ],
        layout="horizontal",
        labels=False,
    ),
    widgets.Label(value="Annotation"),
    widgets.ComboBox(choices=["None", "aparc"]),
    widgets.Label(value="Extract mode"),
    widgets.ComboBox(choices=["mean", "max"]),
])

# %% Create main window
if backend == "pyvistaqt":
    window = widgets.MainWindow(widgets=columns, layout="horizontal")
else:
    from ipywidgets import AppLayout
    window = AppLayout(
        left_sidebar=columns[0].native,
        center=columns[1].native,
    )
    for col in columns:
        col.native.layout.height = "100%"
    columns[0].native.layout.width = "200px"
    for widget in columns[0]:
        widget.native.layout.width = "190px"
    window.layout.align_items = "center"
    window.layout.display = "flex"
    window.layout.width = "810px"  # 10px buffer
    window.layout.height = "610px"  # 10px buffer
    window.layout.flex_flow = "stretch"
    window.layout.border = "1px solid black"
    # columns[0].native.layout.border = "1px solid black"
    # columns[1].native.layout.border = "1px solid red"

# native stuff
backend = mne.viz.get_3d_backend()
assert backend in ("pyvistaqt", "notebook"), backend
if backend ==  "pyvistaqt":
    columns[0].native.layout().addStretch(1)
# %% PyVista renderer
if backend == "pyvistaqt":
    from pyvistaqt import QtInteractor
    from qtpy.QtWidgets import QSizePolicy
    plotter = QtInteractor(parent=window.native, auto_update=False)
    plotter.resize(600, 400)
    plotter.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
    columns[1].native.layout().addWidget(plotter, stretch=2)
else:
    plotter = pyvista.plotting.Plotter(
        off_screen=True,
        notebook=True,
        window_size=(600, 400),
    )
    from pyvista.trame import show_trame
    viewer = show_trame(
        plotter,
        add_menu=False,
        # width="100%",
        # height="100%",
    )
    viewer.value = re.sub(
        r" style=[\"'](.+)[\"']></iframe>",
        # value taken from matplotlib's widget
        r" style='\1; border: none;' scrolling='no'></iframe>",  # noqa: E501
        viewer.value,
    )
    viewer.layout.height = "400px"
    viewer.layout.min_height = "400px"
    viewer.layout.width = "600px"
    viewer.layout.min_width = "600px"
    columns[1].native.children += (viewer,)

grid = pyvista.ImageData(dimensions=(5, 5, 5), origin=(-2, -2, -2)).explode(0.2)
plotter.add_mesh(grid)

# %% matplotlib
dpi = 92
fig = Figure(figsize=(600 / dpi, dpi / 80), dpi=dpi, constrained_layout=True)
ax = fig.subplots()
ax.plot(np.random.RandomState(0).randn(1000))

if backend == "pyvistaqt":
    from matplotlib.backends.backend_qt5agg import FigureCanvas
    canvas = FigureCanvas(fig)
    columns[1].native.layout().addWidget(canvas, stretch=1)
    window.show()
else:
    import ipympl.backend_nbagg
    canvas = ipympl.backend_nbagg.Canvas(fig)
    manager = ipympl.backend_nbagg.FigureManager(canvas, 0)
    canvas.toolbar_visible = False
    canvas.header_visible = False
    canvas.footer_visible = False
    canvas.layout.height = "200px"
    canvas.layout.min_height = "200px"
    fig.set_figheight(200 / dpi)  # shouldn't be necessary but whatever
    fig.set_figwidth(200 / dpi)  # shouldn't be necessary but whatever
    canvas.layout.min_width = "600px"
    canvas.layout.width = "600px"
    canvas.resizable = False
    columns[1].native.children += (canvas,)
    for widget in (window, columns[0].native, columns[1].native, viewer, canvas):
        widget.layout.padding = "0 0 0 0px"
        widget.layout.margin = "0 0 0 0px"
    display(window)
plotter.camera.up = (0., 0., 1.)
plotter.camera.position = (0., -15,  0)
plotter.camera.focal_point = (0., 0., 0.)