larsoner

======================================================================
ERROR: test_decomp_update.TestQRdelete_d.test_delete_last_p_row
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/larsoner/.local/lib/python2.7/site-packages/scipy/linalg/tests/test_decomp_update.py", line 308, in test_delete_last_p_row
    q1, r1 = qr_delete(q, r, 0, a.shape[0], 'row')
  File "scipy/linalg/_decomp_update.pyx", line 1652, in scipy.linalg._decomp_update.qr_delete (scipy/linalg/_decomp_update.c:27659)
ValueError: Reorthogonalization Failed, unable to perform row deletion.

larsoner

# -*- coding: utf-8 -*-
"""
An example where effecting jittering of triggers occurs when
downsampling before epoching.
"""
import numpy as np
import matplotlib.pyplot as plt

# 1 sec of data @ 1000 Hz
fs = 1000.  # Hz

larsoner

from __future__ import print_function

import sys
from os import path as op
import numpy as np
from scipy.io import loadmat
from mne.io import read_info
from mne import pick_types, pick_info
from mne.preprocessing.maxwell import (_concatenate_sph_coils, _sh_negate,
                                       _bases_real_to_complex, _deg_order_idx,

larsoner

import numpy as np
import time
from mne.time_frequency import cwt_morlet
dur = 3.
sfreq = 1000.
x = np.empty((306, int(dur * sfreq)))


def test():
    return cwt_morlet(x, sfreq, np.arange(5, 30))

larsoner

# -*- coding: utf-8 -*-

# see:
# http://eeweb.poly.edu/iselesni/lecture_notes/least_squares/
#     LeastSquares_SPdemos/deconvolution/html/deconv_demo.html

import numpy as np
from scipy import linalg, sparse
import matplotlib.pyplot as plt
from pyeparse.utils import pupil_kernel

larsoner

# -*- coding: utf-8 -*-

import numpy as np
import time

n_choices = 18


def switch_fun(x):
    if x == 0:

larsoner

# -*- coding: utf-8 -*-

# Authors: Eric Larson <[email protected]>
#
# License: BSD (3-clause)

from __future__ import print_function

from copy import deepcopy
import time

larsoner

# -*- coding: utf-8 -*-
"""
Example for creating a time-averaged Evoked file
"""

import numpy as np
import mne
data_path = mne.datasets.sample.data_path()
fname = data_path + '/MEG/sample/sample_audvis-ave.fif'
evoked = mne.read_evokeds(fname, condition='Right Auditory')

larsoner

larsoner@bunk:~$ python
Python 2.7.11+ (default, Apr 17 2016, 14:00:29) 
[GCC 5.3.1 20160413] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import scipy
>>> scipy.test('full')
Running unit tests for scipy
NumPy version 1.12.0.dev0+1fc180b
NumPy relaxed strides checking option: True
NumPy is installed in /home/larsoner/.local/lib/python2.7/site-packages/numpy-1.12.0.dev0+1fc180b-py2.7-linux-x86_64.egg/numpy

larsoner

# -*- coding: utf-8 -*-
import os.path as op
import numpy as np
import mne


def select_center_vertex_in_label(src, label):
    """ Select vertex closest (in Euclidean distance) to the center of mass of
        the given label.