It's been a while. Just a nice process bar here where you can click on the different steps and be presented with information. The box at the top will also animate depending on the steps.
A Pen by Jamie Coulter on CodePen.
Tim Liu liutiming
liutiming
/ Session info for patchwork guide collection
Created
November 27, 2022 00:04
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| <details style="margin-bottom:10px;"> | |
| <summary> | |
| Session info | |
| </summary> | |
| ``` r | |
| sessioninfo::session_info() | |
| #> - Session info -------------------------------------------------------------- | |
| #> hash: motorway, flag: Ethiopia, hand with fingers splayed: medium skin tone | |
| #> |
liutiming
/ deep_learning_with_pytorch_imagesegmentation-1.ipynb
Last active
September 17, 2022 15:23
Deep_Learning_with_PyTorch_ImageSegmentation.ipynb
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liutiming
/ modified_ancestryplot.R
Created
August 3, 2022 14:24
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| ## 20220612_samples.qc.rename.autosome_ancestryplot.R for KING Ancestry plot, by Zhennan Zhu and Wei-Min Chen | |
| rm(list=ls(all=TRUE)) | |
| library(dplyr) | |
| library(e1071) | |
| options(scipen = 999) | |
| prefix <- "20220612_samples.qc.rename.autosome" | |
| pc <- read.table(paste0(prefix, "pc.txt"), header = TRUE) | |
| phe <- read.table(paste0(prefix, "_popref.txt"), header = TRUE, stringsAsFactors = FALSE) | |
| Population <- c(as.character(phe$Population), rep(NA, (nrow(pc) - nrow(phe)))) | |
| dat <- cbind(pc, Population) |
liutiming
/ css-only-order-process-steps.markdown
Created
July 24, 2021 12:14
CSS only order process steps
liutiming
/ 20200930_2012_snakemake_try.log
Created
September 30, 2020 19:21
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| Building DAG of jobs... | |
| Using shell: /usr/local/bin/bash | |
| Provided cluster nodes: 500 | |
| Job counts: | |
| count jobs | |
| 1 targets | |
| 1 try_expand | |
| 2 | |
| [Wed Sep 30 20:12:35 2020] |
liutiming
/ hs_err_pid31802.log
Created
September 27, 2020 07:09
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| # | |
| # There is insufficient memory for the Java Runtime Environment to continue. | |
| # Native memory allocation (malloc) failed to allocate 32744 bytes for ChunkPool::allocate | |
| # Possible reasons: | |
| # The system is out of physical RAM or swap space | |
| # The process is running with CompressedOops enabled, and the Java Heap may be blocking the growth of the native heap | |
| # Possible solutions: | |
| # Reduce memory load on the system | |
| # Increase physical memory or swap space | |
| # Check if swap backing store is full |
liutiming
/ snakemake.log
Created
September 27, 2020 06:53
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| Building DAG of jobs... | |
| Using shell: /usr/local/bin/bash | |
| Provided cluster nodes: 500 | |
| Job counts: | |
| count jobs | |
| 1 add_column_to_bib | |
| 1 targets | |
| 2 | |
| [Sun Sep 27 07:51:11 2020] |
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| __default__: | |
| - "-G team281" | |
| - "-R "select[mem>30000] rusage[mem=30000]" -M 30000" | |
| - "-q normal" | |
| - "-e /nfs/users/nfs_t/tl11/analysis/w3/snakemake/error.log" | |
| - "-o /nfs/users/nfs_t/tl11/analysis/w3/snakemake/output.log" | |
| - "-J snakemake_trial" |