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def f(x):
    return (x**3 + x**2 + x + 1) / (x**2 + x + 1)

x = np.linspace(0,10,100)
plt.plot(x, f(x))
plt.plot(x,x)

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CLUSTAL

0ANNOTATION/1-2208       B1N---B1N~B1C-------B1C--------B1~B2-------B2---------B2~B3-
AGC_AKT1/150-408         FEYL----------------KLLGKGT----------------FGKVILVKE--ka----
AGC_AKT2/152-409         FDYL----------------KLLGKGT----------------FGKVILVRE--ka----
AGC_AKT3/148-405         FDYL----------------KLLGKGT----------------FGKVILVRE--ka----
AGC_CDC42BPA/77-343      FEIL----------------KVIGRGA----------------FGEVAVVKL--kn----
AGC_CDC42BPB/76-342      FEII----------------KVIGRGA----------------FGEVAVVKM--kn----
AGC_CDC42BPG/71-337      FEIL----------------KVIGRGA----------------FGEVTVVRQ--rd----
AGC_CIT/97-360           FEVR----------------SLVGCGH----------------FAEVQVVRE--ka----

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from rdkit import Chem
import numpy as np
from rdkit.Chem import AllChem
from rdkit.Geometry import Point3D

from scipy.spatial.distance import squareform, pdist

import copy

import py3Dmol

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import keras
import tensorflow as tf
class D2M(keras.layers.Layer):
    """
    Converts an EDM `D` to its Gram matrix representation `M`.
    """

    def call(self, inputs, **kwargs):
        batch_size = tf.shape(inputs)[0]
        n_atoms = tf.shape(inputs)[1]

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