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lstagner/crash.txt

Created June 10, 2015 11:08
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IJulia Crash
Raw
crash.txt
EXECUTING dens[err_ind-1] = sum(max(sol.x,0))
dens_err[err_ind-1] = norm(sol.sigma)
x[:,:,err_ind-1] = reshape(max(sol.x,0),npitch,nenergy)
sigma[:,:,err_ind-1] = reshape(sol.sigma,npitch,nenergy)
dx[:,:,err_ind-1] = x[:,:,err_ind-1] .- dist
pygui(true)
make_plots(energy,pitch,x[:,:,err_ind-1],sigma[:,:,err_ind-1],dist)
SENDING IPython Msg [ idents pyin ] {
header = ["msg_id"=>"1442b99d-500f-488e-99c2-e2b4ad9f2a51","msg_type"=>"pyin","username"=>"username","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["code"=>"dens[err_ind-1] = sum(max(sol.x,0))\ndens_err[err_ind-1] = norm(sol.sigma)\nx[:,:,err_ind-1] = reshape(max(sol.x,0),npitch,nenergy)\nsigma[:,:,err_ind-1] = reshape(sol.sigma,npitch,nenergy)\ndx[:,:,err_ind-1] = x[:,:,err_ind-1] .- dist\npygui(true)\nmake_plots(energy,pitch,x[:,:,err_ind-1],sigma[:,:,err_ind-1],dist)","execution_count"=>4]
}
Traceback (most recent call last):
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/backends/backend_qt5.py", line 427, in idle_draw
self.draw()
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/backends/backend_qt5agg.py", line 148, in draw
FigureCanvasAgg.draw(self)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/backends/backend_agg.py", line 469, in draw
self.figure.draw(self.renderer)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/artist.py", line 59, in draw_wrapper
draw(artist, renderer, *args, **kwargs)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/figure.py", line 1085, in draw
func(*args)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/artist.py", line 59, in draw_wrapper
draw(artist, renderer, *args, **kwargs)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axes/_base.py", line 2110, in draw
a.draw(renderer)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/artist.py", line 59, in draw_wrapper
draw(artist, renderer, *args, **kwargs)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axis.py", line 1114, in draw
ticks_to_draw = self._update_ticks(renderer)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axis.py", line 1047, in _update_ticks
tick.update_position(loc)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axis.py", line 579, in update_position
nonlinear = (hasattr(self.axes, 'yaxis') and
AttributeError: 'YTick' object has no attribute 'axes'
SENDING IPython Msg [ idents 9435E47D56D3486F894CA922AEFD2A89 ] {
header = ["msg_id"=>"dc708ce2-7b5c-422f-922b-2b53dc60d9b5","msg_type"=>"execute_reply","username"=>"username","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["status"=>"ok","payload"=>None[],"user_expressions"=>Dict{Any,Any}(),"user_variables"=>Dict{Any,Any}(),"execution_count"=>4]
}
SENDING IPython Msg [ idents status ] {
header = ["msg_id"=>"725152d4-aeb0-4825-b368-123eba6bde85","msg_type"=>"status","username"=>"jlkernel","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["execution_state"=>"idle"]
}
got msg part 9435E47D56D3486F894CA922AEFD2A89
got msg part <IDS|MSG>
RECEIVED IPython Msg [ idents 9435E47D56D3486F894CA922AEFD2A89 ] {
header = ["msg_id"=>"C007401996BE46588CF5B19A1B506944","msg_type"=>"execute_request","username"=>"username","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["store_history"=>true,"user_expressions"=>Dict{String,Any}(),"allow_stdin"=>true,"code"=>"dens[err_ind-1] = sum(max(sol.x,0))\ndens_err[err_ind-1] = norm(sol.sigma)\nx[:,:,err_ind-1] = reshape(max(sol.x,0),npitch,nenergy)\nsigma[:,:,err_ind-1] = reshape(sol.sigma,npitch,nenergy)\ndx[:,:,err_ind-1] = x[:,:,err_ind-1] .- dist\npygui(true)\nmake_plots(energy,pitch,x[:,:,err_ind-1],sigma[:,:,err_ind-1],dist)","user_variables"=>{},"stop_on_error"=>true,"silent"=>false]
}
SENDING IPython Msg [ idents status ] {
header = ["msg_id"=>"7b3bfb70-b3b6-47bf-b866-0d62854b2295","msg_type"=>"status","username"=>"jlkernel","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["execution_state"=>"busy"]
}
EXECUTING dens[err_ind-1] = sum(max(sol.x,0))
dens_err[err_ind-1] = norm(sol.sigma)
x[:,:,err_ind-1] = reshape(max(sol.x,0),npitch,nenergy)
sigma[:,:,err_ind-1] = reshape(sol.sigma,npitch,nenergy)
dx[:,:,err_ind-1] = x[:,:,err_ind-1] .- dist
pygui(true)
make_plots(energy,pitch,x[:,:,err_ind-1],sigma[:,:,err_ind-1],dist)
SENDING IPython Msg [ idents pyin ] {
header = ["msg_id"=>"1982b5bc-1794-4f80-991d-581c3759c880","msg_type"=>"pyin","username"=>"username","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["code"=>"dens[err_ind-1] = sum(max(sol.x,0))\ndens_err[err_ind-1] = norm(sol.sigma)\nx[:,:,err_ind-1] = reshape(max(sol.x,0),npitch,nenergy)\nsigma[:,:,err_ind-1] = reshape(sol.sigma,npitch,nenergy)\ndx[:,:,err_ind-1] = x[:,:,err_ind-1] .- dist\npygui(true)\nmake_plots(energy,pitch,x[:,:,err_ind-1],sigma[:,:,err_ind-1],dist)","execution_count"=>5]
}
Traceback (most recent call last):
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/backends/backend_qt5.py", line 427, in idle_draw
self.draw()
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/backends/backend_qt5agg.py", line 148, in draw
FigureCanvasAgg.draw(self)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/backends/backend_agg.py", line 469, in draw
self.figure.draw(self.renderer)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/artist.py", line 59, in draw_wrapper
draw(artist, renderer, *args, **kwargs)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/figure.py", line 1085, in draw
func(*args)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/artist.py", line 59, in draw_wrapper
draw(artist, renderer, *args, **kwargs)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axes/_base.py", line 2110, in draw
a.draw(renderer)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/artist.py", line 59, in draw_wrapper
draw(artist, renderer, *args, **kwargs)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axis.py", line 1114, in draw
ticks_to_draw = self._update_ticks(renderer)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axis.py", line 1047, in _update_ticks
tick.update_position(loc)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axis.py", line 579, in update_position
nonlinear = (hasattr(self.axes, 'yaxis') and
AttributeError: 'YTick' object has no attribute 'axes'
Traceback (most recent call last):
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/backends/backend_qt5.py", line 427, in idle_draw
self.draw()
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/backends/backend_qt5agg.py", line 148, in draw
FigureCanvasAgg.draw(self)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/backends/backend_agg.py", line 469, in draw
self.figure.draw(self.renderer)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/artist.py", line 59, in draw_wrapper
draw(artist, renderer, *args, **kwargs)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/figure.py", line 1085, in draw
func(*args)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/artist.py", line 59, in draw_wrapper
draw(artist, renderer, *args, **kwargs)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axes/_base.py", line 2110, in draw
a.draw(renderer)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/artist.py", line 59, in draw_wrapper
draw(artist, renderer, *args, **kwargs)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axis.py", line 1114, in draw
ticks_to_draw = self._update_ticks(renderer)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axis.py", line 1047, in _update_ticks
tick.update_position(loc)
File "/home/lstagner/anaconda3/lib/python3.4/site-packages/matplotlib/axis.py", line 579, in update_position
nonlinear = (hasattr(self.axes, 'yaxis') and
AttributeError: 'YTick' object has no attribute 'axes'
SENDING IPython Msg [ idents 9435E47D56D3486F894CA922AEFD2A89 ] {
header = ["msg_id"=>"897c8e5e-a953-4c35-be72-a90560c2bb40","msg_type"=>"execute_reply","username"=>"username","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["status"=>"ok","payload"=>None[],"user_expressions"=>Dict{Any,Any}(),"user_variables"=>Dict{Any,Any}(),"execution_count"=>5]
}
SENDING IPython Msg [ idents status ] {
header = ["msg_id"=>"3e76c89c-c7e0-45dd-a55a-ebda8734073f","msg_type"=>"status","username"=>"jlkernel","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["execution_state"=>"idle"]
}
got msg part 9435E47D56D3486F894CA922AEFD2A89
got msg part <IDS|MSG>
RECEIVED IPython Msg [ idents 9435E47D56D3486F894CA922AEFD2A89 ] {
header = ["msg_id"=>"109EF7F03F2F447EBACB1F7AF39CB802","msg_type"=>"execute_request","username"=>"username","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["store_history"=>true,"user_expressions"=>Dict{String,Any}(),"allow_stdin"=>true,"code"=>"dens[err_ind-1] = sum(max(sol.x,0))\ndens_err[err_ind-1] = norm(sol.sigma)\nx[:,:,err_ind-1] = reshape(max(sol.x,0),npitch,nenergy)\nsigma[:,:,err_ind-1] = reshape(sol.sigma,npitch,nenergy)\ndx[:,:,err_ind-1] = x[:,:,err_ind-1] .- dist\npygui(true)\nmake_plots(energy,pitch,x[:,:,err_ind-1],sigma[:,:,err_ind-1],dist)","user_variables"=>{},"stop_on_error"=>true,"silent"=>false]
}
SENDING IPython Msg [ idents status ] {
header = ["msg_id"=>"4e3c0218-e37a-4693-9032-46cf27c4fe08","msg_type"=>"status","username"=>"jlkernel","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["execution_state"=>"busy"]
}
EXECUTING dens[err_ind-1] = sum(max(sol.x,0))
dens_err[err_ind-1] = norm(sol.sigma)
x[:,:,err_ind-1] = reshape(max(sol.x,0),npitch,nenergy)
sigma[:,:,err_ind-1] = reshape(sol.sigma,npitch,nenergy)
dx[:,:,err_ind-1] = x[:,:,err_ind-1] .- dist
pygui(true)
make_plots(energy,pitch,x[:,:,err_ind-1],sigma[:,:,err_ind-1],dist)
SENDING IPython Msg [ idents pyin ] {
header = ["msg_id"=>"26eb82ca-c4c6-42e6-a81d-2dc57b2a5c88","msg_type"=>"pyin","username"=>"username","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
metadata = Dict{String,Any}(),
content = ["code"=>"dens[err_ind-1] = sum(max(sol.x,0))\ndens_err[err_ind-1] = norm(sol.sigma)\nx[:,:,err_ind-1] = reshape(max(sol.x,0),npitch,nenergy)\nsigma[:,:,err_ind-1] = reshape(sol.sigma,npitch,nenergy)\ndx[:,:,err_ind-1] = x[:,:,err_ind-1] .- dist\npygui(true)\nmake_plots(energy,pitch,x[:,:,err_ind-1],sigma[:,:,err_ind-1],dist)","execution_count"=>6]
}
signal (11): Segmentation fault
_PyObject_GenericGetAttrWithDict at -------src-dir-------/Python-3.4.3/Objects/object.c:1073
PyEval_EvalFrameEx at -------src-dir-------/Python-3.4.3/Python/ceval.c:2421
PyEval_EvalCodeEx at -------src-dir-------/Python-3.4.3/Python/ceval.c:3588
fast_function at -------src-dir-------/Python-3.4.3/Python/ceval.c:4344
PyEval_EvalCodeEx at -------src-dir-------/Python-3.4.3/Python/ceval.c:3588
function_call at -------src-dir-------/Python-3.4.3/Objects/funcobject.c:640
PyObject_Call at -------src-dir-------/Python-3.4.3/Objects/abstract.c:2041
ext_do_call at -------src-dir-------/Python-3.4.3/Python/ceval.c:4561
PyEval_EvalCodeEx at -------src-dir-------/Python-3.4.3/Python/ceval.c:3588
fast_function at -------src-dir-------/Python-3.4.3/Python/ceval.c:4344
PyEval_EvalCodeEx at -------src-dir-------/Python-3.4.3/Python/ceval.c:3588
function_call at -------src-dir-------/Python-3.4.3/Objects/funcobject.c:640
PyObject_Call at -------src-dir-------/Python-3.4.3/Objects/abstract.c:2041
ext_do_call at -------src-dir-------/Python-3.4.3/Python/ceval.c:4561
PyEval_EvalCodeEx at -------src-dir-------/Python-3.4.3/Python/ceval.c:3588
function_call at -------src-dir-------/Python-3.4.3/Objects/funcobject.c:643
PyObject_Call at -------src-dir-------/Python-3.4.3/Objects/abstract.c:2041
ext_do_call at -------src-dir-------/Python-3.4.3/Python/ceval.c:4561
PyEval_EvalCodeEx at -------src-dir-------/Python-3.4.3/Python/ceval.c:3588
function_call at -------src-dir-------/Python-3.4.3/Objects/funcobject.c:640
PyObject_Call at -------src-dir-------/Python-3.4.3/Objects/abstract.c:2041
ext_do_call at -------src-dir-------/Python-3.4.3/Python/ceval.c:4561
PyEval_EvalCodeEx at -------src-dir-------/Python-3.4.3/Python/ceval.c:3588
fast_function at -------src-dir-------/Python-3.4.3/Python/ceval.c:4344
fast_function at -------src-dir-------/Python-3.4.3/Python/ceval.c:4334
fast_function at -------src-dir-------/Python-3.4.3/Python/ceval.c:4334
PyEval_EvalCodeEx at -------src-dir-------/Python-3.4.3/Python/ceval.c:3588
function_call at -------src-dir-------/Python-3.4.3/Objects/funcobject.c:643
PyObject_Call at -------src-dir-------/Python-3.4.3/Objects/abstract.c:2041
PyEval_CallObjectWithKeywords at -------src-dir-------/Python-3.4.3/Python/ceval.c:4115
unknown function (ip: -1041879664)
unknown function (ip: -1044823855)
unknown function (ip: -1044823114)
unknown function (ip: -1044822982)
_ZN7QObject5eventEP6QEvent at /home/lstagner/anaconda3/lib/python3.4/site-packages/PyQt4/../../../libQtCore.so.4 (unknown line)
_ZN19QApplicationPrivate13notify_helperEP7QObjectP6QEvent at /home/lstagner/anaconda3/lib/python3.4/site-packages/PyQt4/../../../libQtGui.so.4 (unknown line)
_ZN12QApplication6notifyEP7QObjectP6QEvent at /home/lstagner/anaconda3/lib/python3.4/site-packages/PyQt4/../../../libQtGui.so.4 (unknown line)
unknown function (ip: -1064487810)
_ZN16QCoreApplication14notifyInternalEP7QObjectP6QEvent at /home/lstagner/anaconda3/lib/python3.4/site-packages/PyQt4/../../../libQtCore.so.4 (unknown line)
_ZN23QCoreApplicationPrivate16sendPostedEventsEP7QObjectiP11QThreadData at /home/lstagner/anaconda3/lib/python3.4/site-packages/PyQt4/../../../libQtCore.so.4 (unknown line)
unknown function (ip: -1050002717)
g_main_context_dispatch at /lib/x86_64-linux-gnu/libglib-2.0.so.0 (unknown line)
unknown function (ip: -1056960440)
g_main_context_iteration at /lib/x86_64-linux-gnu/libglib-2.0.so.0 (unknown line)
_ZN20QEventDispatcherGlib13processEventsE6QFlagsIN10QEventLoop17ProcessEventsFlagEE at /home/lstagner/anaconda3/lib/python3.4/site-packages/PyQt4/../../../libQtCore.so.4 (unknown line)
unknown function (ip: -1081219649)
_ZN16QCoreApplication13processEventsE6QFlagsIN10QEventLoop17ProcessEventsFlagEEi at /home/lstagner/anaconda3/lib/python3.4/site-packages/PyQt4/../../../libQtCore.so.4 (unknown line)
unknown function (ip: -1045114741)
PyObject_Call at -------src-dir-------/Python-3.4.3/Objects/abstract.c:2041
pycall at /home/lstagner/.julia/v0.3/PyCall/src/PyCall.jl:73
doevent at /home/lstagner/.julia/v0.3/PyCall/src/gui.jl:106
jl_apply_generic at /home/lstagner/julia/usr/bin/../lib/libjulia.so (unknown line)
_uv_hook_asynccb at stream.jl:489
jlcall__uv_hook_asynccb_22740 at (unknown line)
jl_apply_generic at /home/lstagner/julia/usr/bin/../lib/libjulia.so (unknown line)
unknown function (ip: -469746233)
uv__run_timers at /home/lstagner/julia/usr/bin/../lib/libjulia.so (unknown line)
uv_run at /home/lstagner/julia/usr/bin/../lib/libjulia.so (unknown line)
process_events at ./stream.jl:537
wait at ./task.jl:287
execute_request_0x535c5df2 at /home/lstagner/.julia/v0.3/IJulia/src/execute_request.jl:183
jlcall_execute_request_0x535c5df2_20758 at (unknown line)
jl_apply_generic at /home/lstagner/julia/usr/bin/../lib/libjulia.so (unknown line)
eventloop at /home/lstagner/.julia/v0.3/IJulia/src/IJulia.jl:123
jl_apply_generic at /home/lstagner/julia/usr/bin/../lib/libjulia.so (unknown line)
anonymous at task.jl:340
jl_handle_stack_switch at /home/lstagner/julia/usr/bin/../lib/libjulia.so (unknown line)
julia_trampoline at /home/lstagner/julia/usr/bin/../lib/libjulia.so (unknown line)
unknown function (ip: 4199613)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 4199667)
unknown function (ip: 0)
[I 04:06:11.544 NotebookApp] KernelRestarter: restarting kernel (1/5)
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