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ORG=$1 | |
mysql --user=genome --host=genome-mysql.cse.ucsc.edu -NA -D $ORG -e \ | |
"select K.chrom,chromStart,chromEnd,X.geneSymbol,G.exonCount,strand from knownCanonical as K, kgXref as X, knownGene as G where | |
X.kgId=K.transcript and G.name=X.kgID;" |
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#!/usr/bin/env python | |
""" | |
simple example script for running and testing notebooks. | |
Usage: `ipnbdoctest.py foo.ipynb [bar.ipynb [...]]` | |
Each cell is submitted to the kernel, and the outputs are compared with those stored in the notebook. | |
""" | |
import os,sys,time |
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<code_scheme name="Airbnb"> | |
<option name="RIGHT_MARGIN" value="100" /> | |
<option name="HTML_ATTRIBUTE_WRAP" value="4" /> | |
<option name="HTML_ELEMENTS_TO_INSERT_NEW_LINE_BEFORE" value="" /> | |
<option name="HTML_ENFORCE_QUOTES" value="true" /> | |
<DBN-PSQL> | |
<case-options enabled="false"> | |
<option name="KEYWORD_CASE" value="lower" /> | |
<option name="FUNCTION_CASE" value="lower" /> | |
<option name="PARAMETER_CASE" value="lower" /> |