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Accessing HMP controlled metadata
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| # Before starting, install the NCBI SRA Tookit: | |
| # Debian/Ubuntu: | |
| # apt install sra-toolkit | |
| # macOS: | |
| # brew install sratoolkit | |
| # Windows: | |
| # see https://tinyurl.com/y845ppaa | |
| # Get your dbGaP repository from https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?page=list_wishlists | |
| # Click "get dbGaP repository key" | |
| library(HMP16SData) | |
| x = V13() | |
| x = attach_dbGaP(x, "~/Downloads/prj_12146.ngc") #replace with path to dbGaP repository key downloaded above | |
| head(colData(x)) ##should see all the controlled metadata |
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